View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_47 (Length: 378)
Name: NF21120_low_47
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 47198529 - 47198696
Alignment:
| Q |
16 |
catcttttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttac |
115 |
Q |
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| T |
47198529 |
catcttttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttac |
47198628 |
T |
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| Q |
116 |
aaacatgttgttcacttttcttattgctcaagctttcttgtccctgttgtgcttatttaagtttggga |
183 |
Q |
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| T |
47198629 |
aaacatgttgttcacttttcttattgctcaagctttcttgtccctgttgtgcttatttaagtttggga |
47198696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 47185990 - 47186141
Alignment:
| Q |
16 |
catcttttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttac |
115 |
Q |
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| T |
47185990 |
catcttttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttac |
47186089 |
T |
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| Q |
116 |
aaacatgttgttcacttttcttattgctcaagctttcttgtccctgttgtgc |
167 |
Q |
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| T |
47186090 |
aaacatgttgttcacttttcttattgctcaagctttcttgtccatgttgtgc |
47186141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 240 - 360
Target Start/End: Original strand, 47198753 - 47198873
Alignment:
| Q |
240 |
attccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttaca |
339 |
Q |
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| T |
47198753 |
attccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttaca |
47198852 |
T |
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| Q |
340 |
ttgaaataagtgagttagaag |
360 |
Q |
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| T |
47198853 |
ttgaaataagtgagttagaag |
47198873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 47186214 - 47186309
Alignment:
| Q |
240 |
attccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagt |
335 |
Q |
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| T |
47186214 |
attccagagacaaagaatatacccattgaagatatggctgagaaagtatggaaacaacattggttctggaagaggtttatgcattgaatttaaagt |
47186309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 47212623 - 47212705
Alignment:
| Q |
21 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgt |
103 |
Q |
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| T |
47212623 |
tttgcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgt |
47212705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 748668 - 748538
Alignment:
| Q |
21 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaaca |
120 |
Q |
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| T |
748668 |
tttgcttggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaaca |
748569 |
T |
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| Q |
121 |
tgttgttcacttttcttattgctcaagcttt |
151 |
Q |
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| T |
748568 |
tgttgttcacctttgtcattgctcaggcttt |
748538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 748443 - 748369
Alignment:
| Q |
246 |
gagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatg |
320 |
Q |
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| T |
748443 |
gagaccaagaacataccaattgaagaaatgaccgagagagtatggaaacaacattggttctggaagaggtttatg |
748369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 1356817 - 1356896
Alignment:
| Q |
21 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaag |
100 |
Q |
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| T |
1356817 |
tttggatggtcgtggggtccactaggttggttagtaccaagtgagatttttccattggagattagatcagctggacaaag |
1356896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 36202702 - 36202747
Alignment:
| Q |
21 |
tttgcatggtcatggggtccacttggttggttaattcctagtgaga |
66 |
Q |
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| T |
36202702 |
tttgcttggtcatggggtcctcttggttggttggttcctagtgaga |
36202747 |
T |
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