View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21120_low_49 (Length: 375)

Name: NF21120_low_49
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21120_low_49
NF21120_low_49
[»] chr3 (2 HSPs)
chr3 (101-368)||(20528919-20529186)
chr3 (1-103)||(20529265-20529367)
[»] scaffold0022 (1 HSPs)
scaffold0022 (282-355)||(60684-60757)
[»] chr4 (1 HSPs)
chr4 (186-343)||(55713215-55713372)
[»] chr1 (3 HSPs)
chr1 (285-317)||(16181404-16181436)
chr1 (308-362)||(19016006-19016060)
chr1 (294-343)||(25587004-25587053)
[»] chr7 (1 HSPs)
chr7 (242-324)||(1506945-1507027)
[»] chr6 (1 HSPs)
chr6 (297-351)||(32152947-32153001)
[»] scaffold0807 (1 HSPs)
scaffold0807 (294-323)||(4949-4978)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 101 - 368
Target Start/End: Complemental strand, 20529186 - 20528919
Alignment:
Q  101 tggtattagtgggacacatctatttgatgagcctcagatgcaatttggtgctttaggtggttttgcgaataggtgtcgtatgctgttgaatattgtttgg 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  20529186 tggtattagtgggacacatttatttgatgagcctcagatgcaatttggtgctttgggtggttttgcgaataggtgtcatatgctgttgaatattgtttgg 20529087  T
Q  201 atttctacggtatggataatttgaaaaaagtgcaatcatcatatttttcaccataaggaggaaactttacacgcattatgcgagaagattaagcttcaaa 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20529086 atttctacggtatggataatttgaaaaaagcgcaatcatcatatttttcaccataaggaggaaactttacacgcattatgcgagaagattaagcttcaaa 20528987  T
Q  301 cttattggtggttgaaatcaaaatatgatacttctgattttgaataccatttttggagacttcatctc 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20528986 cttattggtggttgaaatcaaaatatgatacttctgattttgaataccatttttggagacttcatctc 20528919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 20529367 - 20529265
Alignment:
Q  1 taaaagtttctttgtttgtttaacatctgcttcttaatcggatgcggttaaagattacttgctttggaggagagtccttaataacaacgaggatgtggta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  20529367 taaaagtttctttgtttgtttaacgtctgcttcttaatcggatgcgattaaagataacttgctttggaggagagtccttaataacaacgaggatgcggta 20529268  T
Q  101 tgg 103  Q
    |||    
T  20529267 tgg 20529265  T

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Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 60684 - 60757
Alignment:
Q  282 gagaagattaagcttcaaacttattggtggttgaaatcaaaatatgatacttctgattttgaataccatttttg 355  Q
    |||||||| |||||||||| |||||||||||||||||||||||| | ||||| | ||||||| ||||| |||||    
T  60684 gagaagatcaagcttcaaatttattggtggttgaaatcaaaataagctacttttaattttgagtaccagttttg 60757  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 55713215 - 55713372
Alignment:
Q  186 ttgaatattgtttggatttctacggtatggataatttgaaaaaagtgcaatcatcatatttttcaccataaggaggaaactttacacgcattatgcgaga 285  Q
    ||||||||| | ||| |||||||||| ||||||||||| ||  |   || | ||||||||||||| |||||||| ||||  || ||  | ||||||||||    
T  55713215 ttgaatattatctggctttctacggtttggataatttgtaatgaacacagtgatcatatttttcaacataaggacgaaaacttgcaaactttatgcgaga 55713314  T
Q  286 agattaagcttcaaacttattggtggttgaaatcaaaatatgatacttctgattttga 343  Q
    |||||||||| ||  ||||||||||| |||||| |||||| | ||| | |||||||||    
T  55713315 agattaagctgcagtcttattggtggctgaaattaaaatacgttacatttgattttga 55713372  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 16181436 - 16181404
Alignment:
Q  285 aagattaagcttcaaacttattggtggttgaaa 317  Q
    |||||||||||||||||||||||||||||||||    
T  16181436 aagattaagcttcaaacttattggtggttgaaa 16181404  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 19016060 - 19016006
Alignment:
Q  308 gtggttgaaatcaaaatatgatacttctgattttgaataccatttttggagactt 362  Q
    |||||||||||||||||||  ||||| |||||| || ||||||||||| ||||||    
T  19016060 gtggttgaaatcaaaatatattacttttgatttcgattaccatttttgaagactt 19016006  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 25587053 - 25587004
Alignment:
Q  294 cttcaaacttattggtggttgaaatcaaaatatgatacttctgattttga 343  Q
    |||||||  ||||||||||||||||||||| ||| ||||| |||||||||    
T  25587053 cttcaaatatattggtggttgaaatcaaaacatgctacttttgattttga 25587004  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 1507027 - 1506945
Alignment:
Q  242 tatttttcaccataaggaggaaactttacacgcattatgcgagaagattaagcttcaaacttattggtggttgaaatcaaaat 324  Q
    |||||||||  |||||||||||| ||||||  | ||||  ||||| |||||||||||  |||||||||  |||||||||||||    
T  1507027 tatttttcagaataaggaggaaaatttacaaactttatatgagaaaattaagcttcagtcttattggtaattgaaatcaaaat 1506945  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 32153001 - 32152947
Alignment:
Q  297 caaacttattggtggttgaaatcaaaatatgatacttctgattttgaataccatt 351  Q
    |||||||||| |||||||||| ||||||| | ||||| || ||||||||||||||    
T  32153001 caaacttatttgtggttgaaagcaaaatacgctacttttgtttttgaataccatt 32152947  T

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Target: scaffold0807 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 4978 - 4949
Alignment:
Q  294 cttcaaacttattggtggttgaaatcaaaa 323  Q
    ||||||||||||||||||||||||||||||    
T  4978 cttcaaacttattggtggttgaaatcaaaa 4949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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