View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_50 (Length: 364)
Name: NF21120_low_50
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 50155083 - 50154747
Alignment:
| Q |
19 |
ggtcccacatgcctagtcaatcacgactttgatgcttttattcagctcgtgttttttctttggttggtttgaaaggaaaaatcaaataaagagggttagt |
118 |
Q |
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| T |
50155083 |
ggtcccacatgcctagtcaatcacgactttgatgcttttattcagctcgtgttttttctttggttggtttgaaaggaaaaatcaaataaagagggttagt |
50154984 |
T |
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| Q |
119 |
atgagggcgttttaggaatcaaatttagtggattgtgttttatttttagtgttttaatttggttggatgatattgaatggaataagatttgattagactt |
218 |
Q |
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| T |
50154983 |
atgagggcgttttaggaatcaaatttagtggattgtgttttatttttagtgttttaatttggttggatgatattgaatggaataagatttgattagactt |
50154884 |
T |
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| Q |
219 |
gaaaatcgcattaccgattccaaattctagttgattggaatgggcaacaagcaagaaaaggaaaaaggaatggatggatataagtggagtgttgtgaacg |
318 |
Q |
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| T |
50154883 |
gaaaatcgcattaccgattccaaattctagttgattggaatgggcaacaagcaagaaaaggaaaaaggaatggatggatataagtggagtgttgtgaacg |
50154784 |
T |
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| Q |
319 |
tcaataatgttgcattaaaaacctttgtgagaataat |
355 |
Q |
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| T |
50154783 |
tcaataatgttgcattaaaaacctttgtgataataat |
50154747 |
T |
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