View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_54 (Length: 346)
Name: NF21120_low_54
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 163524 - 163760
Alignment:
| Q |
1 |
tgcctatatatggtggagttggtggatactgaagcatcatgtagttgatgttttgctttagttaacagagctatcaatgatgggacataaacagaccatt |
100 |
Q |
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| T |
163524 |
tgcctatatgtggtggagttggtggatactgaagcatcatgtagttgatgttttgctttagttaacagagctatcaatgatgggacataaacagaccatt |
163623 |
T |
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| Q |
101 |
tgatgttggtataagttcaactccaagaaagtaatgaggatttctcatgtttttaaaaccaaatgtttcattaaaatgaactcttacacattgagtaaag |
200 |
Q |
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| T |
163624 |
tgacattggtataagttcaactccaagaaagtaatgaggatttctcatgtttttaaaaccaaatgtttcattaaaaggaactcttacacattgagtaaag |
163723 |
T |
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| Q |
201 |
cctttggccataaggcgtgctttgtacatagttgtct |
237 |
Q |
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| T |
163724 |
cctttggccataaggcgtgctttgtacatagttgtct |
163760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 163339 - 163267
Alignment:
| Q |
241 |
ttgcaatatatctcaacatcagcctacatcatattctttggtggcaatctagtctcatggctatcaaagaaat |
313 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
163339 |
ttgctatatatctcaacatcagcctacatcatattctttggtggcaatctaatctcatggctatcaaagaaat |
163267 |
T |
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