View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21120_low_56 (Length: 334)

Name: NF21120_low_56
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21120_low_56
NF21120_low_56
[»] chr4 (15 HSPs)
chr4 (1-333)||(23402281-23402613)
chr4 (1-72)||(23886034-23886105)
chr4 (1-72)||(24307430-24307501)
chr4 (1-69)||(23453375-23453443)
chr4 (2-72)||(26434232-26434302)
chr4 (2-72)||(26832943-26833013)
chr4 (1-68)||(23415713-23415780)
chr4 (1-69)||(23868939-23869007)
chr4 (2-72)||(26436012-26436082)
chr4 (5-69)||(34662044-34662108)
chr4 (5-68)||(23408544-23408607)
chr4 (172-225)||(23414976-23415028)
chr4 (157-225)||(24298438-24298506)
chr4 (181-225)||(24298816-24298860)
chr4 (4-72)||(31632861-31632929)
[»] chr7 (1 HSPs)
chr7 (1-72)||(47317489-47317560)
[»] chr1 (3 HSPs)
chr1 (1-72)||(33216652-33216723)
chr1 (4-72)||(45576413-45576481)
chr1 (14-65)||(41670620-41670671)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 23402281 - 23402613
Alignment:
Q  1 tggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttgcctttgttgggatcttgtttgatgttac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23402281 tggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttagattttcctttgttgggatcttgtttgatgttac 23402380  T
Q  101 ttcatcggatattagggattgttagaagttttaattagtagttttagnnnnnnngctttgaagctgtaatgaagtagtgagatctggttgatcctctttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  23402381 ttcatcggatattagggattgttagaagttttaattagtagttttagtttttttgctttgaagctgtaatgaagtagtgagatctggttgatcctctttg 23402480  T
Q  201 tgtatgataatggtggaattaatgacatttagtttaaaaattgtttgtattgttcaatttaattttctgcacttgttctgtaagttttaaaacactttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23402481 tgtatgataatggtggaattaatgacatttagtttaaaaattgtttgtattgttcaatttaattttctgcacttgttctgtaagttttaaaacactttca 23402580  T
Q  301 gttaatgaaacctgcattattttattaggttat 333  Q
    |||||||||||||||||||||||||||||||||    
T  23402581 gttaatgaaacctgcattattttattaggttat 23402613  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 23886034 - 23886105
Alignment:
Q  1 tggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23886034 tggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 23886105  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 24307430 - 24307501
Alignment:
Q  1 tggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 72  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||    
T  24307430 tggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttagatttg 24307501  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 23453443 - 23453375
Alignment:
Q  1 tggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagat 69  Q
    |||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||    
T  23453443 tggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttagat 23453375  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 26434232 - 26434302
Alignment:
Q  2 ggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 72  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||    
T  26434232 ggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttg 26434302  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 26832943 - 26833013
Alignment:
Q  2 ggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 72  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||    
T  26832943 ggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttg 26833013  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23415780 - 23415713
Alignment:
Q  1 tggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 68  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||    
T  23415780 tggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttaga 23415713  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23868939 - 23869007
Alignment:
Q  1 tggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagat 69  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||    
T  23868939 tggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 23869007  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 26436012 - 26436082
Alignment:
Q  2 ggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 72  Q
    ||||||||||||||||||| ||| |||||||| ||||| ||||| || |||||||| ||||||||||||||    
T  26436012 ggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttagatttg 26436082  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 34662108 - 34662044
Alignment:
Q  5 gaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagat 69  Q
    |||||||| ||||||||||| |||||||| ||||||||||| || |||||||| |||||||||||    
T  34662108 gaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttagat 34662044  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 23408607 - 23408544
Alignment:
Q  5 gaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 68  Q
    |||||||||||||||||||| ||||| || ||||| |||||||| ||||||||||| |||||||    
T  23408607 gaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttaga 23408544  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 23415028 - 23414976
Alignment:
Q  172 aagtagtgagatctggttgatcctctttgtgtatgataatggtggaattaatga 225  Q
    ||||| || ||||||||||||||| |||||||||||||||||||||||||||||    
T  23415028 aagtaatgggatctggttgatcct-tttgtgtatgataatggtggaattaatga 23414976  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 24298438 - 24298506
Alignment:
Q  157 tttgaagctgtaatgaagtagtgagatctggttgatcctctttgtgtatgataatggtggaattaatga 225  Q
    ||||||| ||| |||||||| |   |||| ||||||||| ||||||||||||| |||||||||||||||    
T  24298438 tttgaagttgtgatgaagtaattgtatcttgttgatcctttttgtgtatgatagtggtggaattaatga 24298506  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 24298816 - 24298860
Alignment:
Q  181 gatctggttgatcctctttgtgtatgataatggtggaattaatga 225  Q
    ||||| ||||||||| ||||||||||||||||||  |||||||||    
T  24298816 gatcttgttgatcctttttgtgtatgataatggtaaaattaatga 24298860  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 31632861 - 31632929
Alignment:
Q  4 tgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 72  Q
    ||||||||| ||||||| ||| | |||||| ||||||| ||||||||| || || || |||||||||||    
T  31632861 tgaattggctaagcatgttgtttgtgagggtaccaaagttgtgaccaaattcacaagctcttagatttg 31632929  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 47317489 - 47317560
Alignment:
Q  1 tggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 72  Q
    ||||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  47317489 tggtgaattggccaaacatgttgtttctgagggtaccaaagctgtgaccaagtttactagttcttaaatttg 47317560  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 33216652 - 33216723
Alignment:
Q  1 tggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 72  Q
    ||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||| ||||||| |||||    
T  33216652 tggtgaattggccaaacatgctgtttctgagggtaccaaggctgtgaccaagtttactggttcttaaatttg 33216723  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 45576413 - 45576481
Alignment:
Q  4 tgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 72  Q
    ||||||||| ||||||| ||| |||||||| ||||||||||||||||| || || || |||||||||||    
T  45576413 tgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttagatttg 45576481  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 41670620 - 41670671
Alignment:
Q  14 aagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttctt 65  Q
    |||||||||||||||||||||||||| ||||| ||||| || ||||| ||||    
T  41670620 aagcatgctgtctctgagggaaccaaggctgttaccaaattcactagctctt 41670671  T

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