View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_58 (Length: 331)
Name: NF21120_low_58
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 49870425 - 49870738
Alignment:
| Q |
1 |
taaaatgtgaaaatggttggcattcagcatgcatgcaagcagggatggatacagaaatatataaaaagaggtaacattgatttggatgtaaagtaattaa |
100 |
Q |
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| T |
49870425 |
taaaatgtcaaaatggtttgcattcagcatgcatgcatgcagggatggctccataaatatataaaaagaggtaacattgattttgatttaaattaattaa |
49870524 |
T |
|
| Q |
101 |
gcagctcttggaaggggtccagctggctgtgctcccattgcatagggaattccagattcggtaatccaatcatcacgagcagttgcgttagcaatttcgt |
200 |
Q |
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| T |
49870525 |
gcagctcttggaaggggtccagctggctgtgctcccattgcatagggaattccagattcagtaatccaatcatcacgagcagttgcgttagcaatttcgt |
49870624 |
T |
|
| Q |
201 |
aaaactttcctggatagtacttagcagcttcaccggcagagatggttttaacacctggccatttcactctaagattagtggcagcaccatcacccttgtt |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49870625 |
aaaactttcctggatagtatttagcagcttcaccggcagagatggttttaacacctggccatttcactctaagattagtggcagcaccagcacccttgtt |
49870724 |
T |
|
| Q |
301 |
gttgtattccaaat |
314 |
Q |
| |
|
|||||||||||||| |
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| T |
49870725 |
gttgtattccaaat |
49870738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 102 - 314
Target Start/End: Original strand, 49864589 - 49864801
Alignment:
| Q |
102 |
cagctcttggaaggggtccagctggctgtgctcccattgcatagggaattccagattcggtaatccaatcatcacgagcagttgcgttagcaatttcgta |
201 |
Q |
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||||||| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49864589 |
cagctctgggaaggggtccagctggctgtgctccaattgaataaggaattccagattcggtaatccaatcatcacgagcagttccgttagcaatttcgta |
49864688 |
T |
|
| Q |
202 |
aaactttcctggatagtacttagcagcttcaccggcagagatggttttaacacctggccatttcactctaagattagtggcagcaccatcacccttgttg |
301 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49864689 |
aaactttcctggatagtatttagcagcttcaccggcagagatggttttaacacctggccatttcactctaagattagtggcagcaccagcacccttgttg |
49864788 |
T |
|
| Q |
302 |
ttgtattccaaat |
314 |
Q |
| |
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||||||||||||| |
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| T |
49864789 |
ttgtattccaaat |
49864801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 49864400 - 49864507
Alignment:
| Q |
1 |
taaaatgtgaaaatggttggcattcagcatgca----tgcaagcagggatggatacagaaatatataaaaagaggtaacattgatttggatgtaaagtaa |
96 |
Q |
| |
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|||||||| ||||| ||| |||||||||||||| |||| |||||||||| ||| || |||||||||||||||| | ||||| | | | |||| ||| |
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| T |
49864400 |
taaaatgtcaaaattgtttgcattcagcatgcacgcatgcatgcagggatggctacctaagtatataaaaagaggtagctttgatgttggtttaaattaa |
49864499 |
T |
|
| Q |
97 |
ttaagcag |
104 |
Q |
| |
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|||||||| |
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|
| T |
49864500 |
ttaagcag |
49864507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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