View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_59 (Length: 330)
Name: NF21120_low_59
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 29759017 - 29759322
Alignment:
| Q |
1 |
cttcacaatcttctatcattttcgtcttcgtccaacatgacccagattcatacattgaagaagaaacaatgacaatgaaaacacatcttatttgcttagt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29759017 |
cttcaccatcttctatcattttcgtcttcgtccaacatgacccagattcatacattgaagaagaaacaatgacaatgaaaacacatcttatttgcttagt |
29759116 |
T |
|
| Q |
101 |
tgtgaaattaaaacacatcttaatttgcttagttgcgaaattaaaagataatttaagtaataatgagtggattatctatcttccnnnnnnnggatctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29759117 |
tgtgaaattaaaacacatcttaatttgcttagttgcgaaattaaaacacaatttaagtaataatgagtggattatctatcttcctttttttggatctcaa |
29759216 |
T |
|
| Q |
201 |
aacaaatgcacaggtgcaaccacccgagaaagagaaagagcgacaagtgttattttttgttccattgtgatctcgacgattatatctaaaacggatactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29759217 |
aacaaatgcacaggtgcaaccacccgagaaagagaaagagcgacaagtgttattttttgttccattgtgatctcgacgattatatctaaaacggatactt |
29759316 |
T |
|
| Q |
301 |
tttggg |
306 |
Q |
| |
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|||||| |
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| T |
29759317 |
tttggg |
29759322 |
T |
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