View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21120_low_6 (Length: 696)

Name: NF21120_low_6
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21120_low_6
NF21120_low_6
[»] chr4 (2 HSPs)
chr4 (19-417)||(37615638-37616034)
chr4 (396-432)||(17558824-17558860)
[»] chr1 (4 HSPs)
chr1 (536-673)||(52140746-52140883)
chr1 (373-434)||(6923510-6923571)
chr1 (487-530)||(52140901-52140944)
chr1 (603-635)||(52131249-52131281)
[»] chr6 (1 HSPs)
chr6 (19-356)||(22083427-22083733)
[»] chr8 (5 HSPs)
chr8 (559-661)||(17524854-17524955)
chr8 (431-555)||(17524437-17524571)
chr8 (18-76)||(6135241-6135299)
chr8 (18-76)||(6173296-6173354)
chr8 (396-433)||(16367881-16367918)
[»] chr3 (2 HSPs)
chr3 (395-436)||(52130754-52130795)
chr3 (396-432)||(5561552-5561588)
[»] chr7 (1 HSPs)
chr7 (395-431)||(24763319-24763355)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 37616034 - 37615638
Alignment:
Q  19 attcaaattatgatacacttgaaggagattatgccaaaatgaaattgtcacctccattataaaacttaatatgttatttaatgttttcaggtgaattggt 118  Q
    |||||||||||||||||||||||||| ||||||||| |   ||| | |||||| ||| || ||||||| |||||||||||||||||||||||||||||||    
T  37616034 attcaaattatgatacacttgaaggaaattatgccatat--aaactctcacctgcataatgaaactta-tatgttatttaatgttttcaggtgaattggt 37615938  T
Q  119 gctgatggttacgtattttacaatagatatacttataagaaaccaactatgttagtcaatttgctttgaattgatatatttaaattcagggtggagtaaa 218  Q
    |||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37615937 gctgatggttacatattttgcaatagatacacttattagaaaccaactatgttagtcaatttgctttgaattgatatatttaaattcagggtggagtaac 37615838  T
Q  219 ataggccggacaattatggttatgtatgtctatcatatct--ataattttttaacctatgtaagatgatcatacgtcaattaattaatcgcatttagtca 316  Q
    |||||||| |||||||||| ||||||||||| ||||||||    | ||||||||||||||||||| |||| ||||||    |||||||||||||  ||||    
T  37615837 ataggccgaacaattatggctatgtatgtctctcatatcttcgaatttttttaacctatgtaagacgatcgtacgtc----aattaatcgcattacgtca 37615742  T
Q  317 gaacaatttggtacattgagtaactatatattaattttatcggatatat---gattgctttcaactaatatttttagcaaattatgacccatgcggcagc 413  Q
    ||||||||  ||| |||||||||||||||||||||||||| ||||||||    || |||||||||||||| |||||| |||||||||||| ||| |||||    
T  37615741 gaacaattcagtatattgagtaactatatattaattttattggatatataacaatggctttcaactaatagttttagtaaattatgacccgtgcagcagc 37615642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 17558860 - 17558824
Alignment:
Q  396 tatgacccatgcggcagcacgggtagacaatctagtt 432  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  17558860 tatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 536 - 673
Target Start/End: Complemental strand, 52140883 - 52140746
Alignment:
Q  536 gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140883 gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac 52140784  T
Q  636 caaacttacttttacaattttctatacatcttccacta 673  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  52140783 caagcttacttttacaattttctatacatcttccacta 52140746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 434
Target Start/End: Original strand, 6923510 - 6923571
Alignment:
Q  373 ttcaactaatatttttagcaaattatgacccatgcggcagcacgggtagacaatctagttta 434  Q
    ||||||||||||||||||| |  |||||||| ||| || |||||||||||| ||||||||||    
T  6923510 ttcaactaatatttttagctatatatgacccgtgctgctgcacgggtagacgatctagttta 6923571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 530
Target Start/End: Complemental strand, 52140944 - 52140901
Alignment:
Q  487 gttggccaattgcagaggaggataagagaactcaaaatcaagct 530  Q
    ||||||||||||||||||||  |||||||||||||||| |||||    
T  52140944 gttggccaattgcagaggagattaagagaactcaaaattaagct 52140901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 603 - 635
Target Start/End: Complemental strand, 52131281 - 52131249
Alignment:
Q  603 cattccaatttccaatctctaagtaataaatac 635  Q
    |||||||||||||||||||| ||||||||||||    
T  52131281 cattccaatttccaatctcttagtaataaatac 52131249  T

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Target: chr6 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 22083427 - 22083733
Alignment:
Q  19 attcaaattatgatacacttgaaggagattatgccaaaatgaaattgtcacctccattataaaacttaatatgttatttaatgttttcaggtgaattggt 118  Q
    |||||||||||||||||||||||||| ||||||||| |   ||| | |||||||||| || ||||||| |||||||||||| |||||||||||||||||     
T  22083427 attcaaattatgatacacttgaaggaaattatgccatat--aaactctcacctccataatgaaactta-tatgttatttaacgttttcaggtgaattgga 22083523  T
Q  119 gctgatggttacgtattttacaatagatatacttataagaaaccaactatgttagtcaatttgctttgaattgatatatttaaattcagggtggagtaaa 218  Q
    |||||||||||| |||||| ||||||||| ||||||||||||||||                 ||||||||||||||||||||||||||||||||||||     
T  22083524 gctgatggttacatattttgcaatagatacacttataagaaaccaa----------------actttgaattgatatatttaaattcagggtggagtaac 22083607  T
Q  219 ataggccggacaattatggttatgtatgtctatcatatctataattttttaacctatgtaagatgatcatacgtcaattaattaatcgcatttagtcaga 318  Q
    |||||||| ||| |||||| ||||||||||| |||||||        ||  |||||||||||| |||||||||    | |||||||||||||  ||||||    
T  22083608 ataggccgaacagttatggctatgtatgtctctcatatc--------ttcgacctatgtaagacgatcatacg----tgaattaatcgcattacgtcaga 22083695  T
Q  319 acaatttggtacattgagtaactatatattaattttat 356  Q
    ||||||  ||||||||||||||||||| ||||||||||    
T  22083696 acaattcagtacattgagtaactatatcttaattttat 22083733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 559 - 661
Target Start/End: Original strand, 17524854 - 17524955
Alignment:
Q  559 acatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaataccaaacttacttttacaattttct 658  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  17524854 acatcgaattaaattagcaataccgtggccagtaggacttcatacattccaatttccaatctctaagtaataaatacc-aagttacttttacaattttct 17524952  T
Q  659 ata 661  Q
    |||    
T  17524953 ata 17524955  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 431 - 555
Target Start/End: Original strand, 17524437 - 17524571
Alignment:
Q  431 tttaacaaatttgtgtgaaccatcgcggtattctaccaagtttctcttgctcaaatg-ttggccaattgcagaggaggataagagaactcaaaatcaag- 528  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||  |||||||||||||||| |||     
T  17524437 tttaagaaatttgtgtgaaacatcgcggtactctaccaagtttctcttgctccaatgtttggccaattgcagaggagattaagagaactcaaaattaagc 17524536  T
Q  529 --------ctcgtaagtggcaactgtttgtacata 555  Q
            |||||||||||||||||||||||||||    
T  17524537 tttaattactcgtaagtggcaactgtttgtacata 17524571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 6135299 - 6135241
Alignment:
Q  18 gattcaaattatgatacacttgaaggagattatgccaaaatgaaattgtcacctccatt 76  Q
    ||||||||||||||||| ||||||||| || |||||| ||||| | || ||||||||||    
T  6135299 gattcaaattatgatacgcttgaaggaaatcatgccataatgagactggcacctccatt 6135241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 6173354 - 6173296
Alignment:
Q  18 gattcaaattatgatacacttgaaggagattatgccaaaatgaaattgtcacctccatt 76  Q
    ||||| |||||||| || ||||||||| ||||||||| ||||| | |||||||||||||    
T  6173354 gattcgaattatgagacgcttgaaggaaattatgccataatgagactgtcacctccatt 6173296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Original strand, 16367881 - 16367918
Alignment:
Q  396 tatgacccatgcggcagcacgggtagacaatctagttt 433  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  16367881 tatgacccgtgcggcagcacgggtagacgatctagttt 16367918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 52130754 - 52130795
Alignment:
Q  395 ttatgacccatgcggcagcacgggtagacaatctagtttaac 436  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  52130754 ttatgacccgtgcggcagcacgggtagacaatctagtctaac 52130795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 5561588 - 5561552
Alignment:
Q  396 tatgacccatgcggcagcacgggtagacaatctagtt 432  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  5561588 tatgacccgtgcggcagcacgggtagacgatctagtt 5561552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 24763319 - 24763355
Alignment:
Q  395 ttatgacccatgcggcagcacgggtagacaatctagt 431  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24763319 ttatgacccgtgcggcagcacgggtagacaatctagt 24763355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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