View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_62 (Length: 315)
Name: NF21120_low_62
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 47248513 - 47248811
Alignment:
| Q |
1 |
tctgcaatagattctgaacattaggtactttgaaatattactctagataatcaaataaatcaatgtccataacaacaagtatttacccaaggatgtgctc |
100 |
Q |
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| T |
47248513 |
tctgcaatagattctgaacattaggtactttgaaatattactctagataatcaaataaatcaatgtccataacaacaagtatttacccaaggatgtgctc |
47248612 |
T |
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| Q |
101 |
caggccggataataaatctggcaagaaatataaccgatgcagccacaacagaaggcaagaaccttgtacactcatagtccaacaagcttaagtcagcaag |
200 |
Q |
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| T |
47248613 |
caggccggataataaatctggcaagaaatataaccgatgcagccacaacagaaggcaagaaccttgtacactcatagtccaacaagcttaagtcagcaag |
47248712 |
T |
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| Q |
201 |
atagctgcacaggaattcaaactgcaaattggaattctgcaattaaaacaaacaaacaattagtaaactcaacacaagcttttgacatcatcaactaat |
299 |
Q |
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| T |
47248713 |
atagctgcacaggaattcaaactgcaaattggaattctgcaattaaaacaaacaaacaattagtaaacacaacacaagcttttgacatcatcaactaat |
47248811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 69 - 257
Target Start/End: Original strand, 47242136 - 47242324
Alignment:
| Q |
69 |
ataacaacaagtatttacccaaggatgtgctccaggccggataataaatctggcaagaaatataaccgatgcagccacaacagaaggcaagaaccttgta |
168 |
Q |
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| T |
47242136 |
ataacatcaaatatttacccaaggatgtactccaggccggagaataaatctagcaagaaagataacagaagcagccacaattgaaggcatgaatcttata |
47242235 |
T |
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| Q |
169 |
cactcatagtccaacaagcttaagtcagcaagatagctgcacaggaattcaaactgcaaattggaattctgcaattaaaacaaacaaac |
257 |
Q |
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| T |
47242236 |
cattcatagtccagcaggcttatatcggcaagataattgcacagatattcaaactgcaaattggaagtctgaaattaaaacaaacaaac |
47242324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 47253395 - 47253545
Alignment:
| Q |
68 |
cataacaacaagtatttacccaaggatgtgctccaggccggataataaatctggcaagaaatataaccgatgcagccacaacagaaggcaagaaccttgt |
167 |
Q |
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| T |
47253395 |
cataacatcaaatatttaccaaaggatgtactccaggacagattatgaatctagcaagaaatataacagatgcagccaccatagaaggcaagaatcttat |
47253494 |
T |
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| Q |
168 |
acactcatagtccaacaagcttaagtcagcaagatagctgcacaggaattc |
218 |
Q |
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| T |
47253495 |
acattcatagtctatcaagcttagctcagcaagatagttacacagaaattc |
47253545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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