View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21120_low_63 (Length: 312)
Name: NF21120_low_63
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_63 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 107 - 288
Target Start/End: Original strand, 6171883 - 6172064
Alignment:
| Q |
107 |
agggtctaaatgatttttggttcactatggatatcacctattcattgccgttgatatattataaaatattaagtgttgcctattttataatatatcaacg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6171883 |
agggtctaaatgatttttggttcactatggatatcacctattcattgccgttgatatattataaaatattaagtgttgcctattttataatatatcaacg |
6171982 |
T |
|
| Q |
207 |
aatattgaaagttgatgcattttgaatcaaaattcatttgcatcatactctatgttaccttactttcttgtaatgtatagaa |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
6171983 |
aatattgaaagttgatgcattttgaatcaaaattcatttgcatcatactctatgtcaccttactttcctgtaatgtatagaa |
6172064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6171777 - 6171819
Alignment:
| Q |
1 |
agtacttagggttctaaagccttttgcttcttttcttttacct |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6171777 |
agtacttagggttctaaagccttttgcttcttttcttttacct |
6171819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University