View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_68 (Length: 303)
Name: NF21120_low_68
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 31444845 - 31445119
Alignment:
| Q |
19 |
tggatgaccccacagggaaacaaaccatcaagccatgatgtgattactggaagatggacgccatctgatgctgacaggtcagctgggagggtacccggat |
118 |
Q |
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| T |
31444845 |
tggatgaccccacagggaaacaaaccatcaagccatgatgtgattactggaagatggacgccatctgatgctgacaggtcagcaaggagggtacccggat |
31444944 |
T |
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| Q |
119 |
atggcgtgatcaccaacataatcaacggcgggcttgaatgtggacgcggtcaggatcctcgggtcgaagaccgaatcgggttttttaaaagatattgtca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
31444945 |
atggcgtgatcaccaacataatcaacggcgggcttgaatgtggacgcggtcaggatcctcgggtcgaagaccggatcgggttttataaaagatattgtca |
31445044 |
T |
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| Q |
219 |
attgttgggaacgactaccggtaataacttggattgctacaatcaaagaccatttgcttaagccaattacctatg |
293 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31445045 |
attgttgagaacgactaccggtgataacttggattgctacaatcaaaggccatttgcttaagccaattacctatg |
31445119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 31430524 - 31430798
Alignment:
| Q |
19 |
tggatgaccccacagggaaacaaaccatcaagccatgatgtgattactggaagatggacgccatctgatgctgacaggtcagctgggagggtacccggat |
118 |
Q |
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||||||||||| || | |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||| |||| ||||||| |
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| T |
31430524 |
tggatgacccctcaagcaaacaagccatcaagccatgatgtgattaccggaagatggacgccatctgctgctgacagctcagcagggcgggtccccggat |
31430623 |
T |
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| Q |
119 |
atggcgtgatcaccaacataatcaacggcgggcttgaatgtggacgcggtcaggatcctcgggtcgaagaccgaatcgggttttttaaaagatattgtca |
218 |
Q |
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| T |
31430624 |
acggcgtgatcaccaacataatcaacggcgggctcgaatgcgggcacggtcaggatcctaaagtcgaggatcgggtcggattttatagaaggtattgtca |
31430723 |
T |
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| Q |
219 |
attgttgggaacgactaccggtaataacttggattgctacaatcaaagaccatttgcttaagccaattacctatg |
293 |
Q |
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| | |||||| || |||| |||||||||||||| |||| ||||| |||||||| ||||| || |||||||| |
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| T |
31430724 |
aatattgggagtgaaccccggcaataacttggattgtaacaaccaaaggccatttgcctaagcgaagtacctatg |
31430798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 31434650 - 31434924
Alignment:
| Q |
19 |
tggatgaccccacagggaaacaaaccatcaagccatgatgtgattactggaagatggacgccatctgatgctgacaggtcagctgggagggtacccggat |
118 |
Q |
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||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||| | ||| ||||||||||| || |||| ||||||| |
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| T |
31434650 |
tggatgacccctcaaggaaacaagccatcaagccatgatgtgattattggaagatggacgccatcgggtgcagacaggtcagccggacgggtccccggat |
31434749 |
T |
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| Q |
119 |
atggcgtgatcaccaacataatcaacggcgggcttgaatgtggacgcggtcaggatcctcgggtcgaagaccgaatcgggttttttaaaagatattgtca |
218 |
Q |
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| |||||||||||||||||||||||||| ||||| ||||| || | || |||||| |||| || | || || |||||||||| || ||| |||||||| |
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| T |
31434750 |
acggcgtgatcaccaacataatcaacggtgggctcgaatgcgggcatggacaggatgctcgagttaatgatcggatcgggttttatagaaggtattgtca |
31434849 |
T |
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| Q |
219 |
attgttgggaacgactaccggtaataacttggattgctacaatcaaagaccatttgcttaagccaattacctatg |
293 |
Q |
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| | |||||| || | | ||| |||||||||||||| |||| |||||| ||||||||||||| | ||||||||| |
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| T |
31434850 |
aatattgggagtgagtcctggtgataacttggattgcaacaaccaaagatcatttgcttaagcgagttacctatg |
31434924 |
T |
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