View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_69 (Length: 302)
Name: NF21120_low_69
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_69 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 5932988 - 5932740
Alignment:
| Q |
19 |
aaggattaaggaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttcttttgcatgattcgtcgttgatatgatggtgtt |
118 |
Q |
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| T |
5932988 |
aaggattaaggaaggtgcgtgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttcttttgtgtgattcgtcgttgatatgatggtgtt |
5932889 |
T |
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| Q |
119 |
tgcagctgttcaaggaattagacatgtttatgggattcttcatgattttgtgtcctgttttaatattttgttatttttcaataatgtgtcagtttgtatt |
218 |
Q |
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| T |
5932888 |
tgcagttgtttgaggaattagacatgtttatgagattcttcatgattttgtgtcctgttttaatattttgttattttccaataatgtgtcagtttgtatt |
5932789 |
T |
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| Q |
219 |
tggaaaagttgttggcttttaattttgttttagtaagctaagtctaatg |
267 |
Q |
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| T |
5932788 |
tggaaaagttgctggcttttaattttgttttagtaagctaagtctaatg |
5932740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 19253606 - 19253518
Alignment:
| Q |
19 |
aaggattaaggaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttcttttgcatgattcgtcgttgat |
107 |
Q |
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| T |
19253606 |
aaggattaacgaaggtgcacgtgttgtggttggtgctcctagagtgggactgaatttgactctattcttttgcataattcgtcgatgat |
19253518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 18197017 - 18197262
Alignment:
| Q |
22 |
gattaaggaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttcttttgcatgattcgtcgttgatatgatggtgtttgc |
121 |
Q |
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| T |
18197017 |
gattaaggaatgtgcatgtgtggtggttggtgctccagaagtgggaatgaatctgactctcttcttttgcgtgattcctcgttgatatgatggtgtttgc |
18197116 |
T |
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| Q |
122 |
agctgttcaaggaattagacatgtttatgggattcttcatgattttgtgtcctgttttaatattttgttatttttcaataatgtgtcagtttgtatttgg |
221 |
Q |
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| T |
18197117 |
aactgttcgaggaattagacatgtttatgggattcttcatgattttgtgtcctgttttaatattttgttatttttcaataatttgtcagtttgtatttgg |
18197216 |
T |
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| Q |
222 |
aaaagttgttggcttttaattttgttttagtaagctaagtctaatg |
267 |
Q |
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| T |
18197217 |
aaaagttgttggcttttaattttgttttagtaagttaagtctaatg |
18197262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 6921 - 6859
Alignment:
| Q |
23 |
attaaggaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttc |
85 |
Q |
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| T |
6921 |
attaaggaaggtgctcgtgtggtggtaggggctccagctgtggggatgaatttgactctcttc |
6859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 15385945 - 15385883
Alignment:
| Q |
23 |
attaaggaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttc |
85 |
Q |
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| T |
15385945 |
attaaggaaggtgctcgtgtggtggtaggggctccagctgtggggatgaatttgactctcttc |
15385883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 24325160 - 24325221
Alignment:
| Q |
24 |
ttaaggaaggtgcgcgtgtggtggttggtgctccaggagtgggaatgaatctgactctcttc |
85 |
Q |
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| T |
24325160 |
ttaaggaaggtgctcgtgtggtggtaggggttccagctgtggggatgaatttgactctcttc |
24325221 |
T |
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