View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_70 (Length: 300)
Name: NF21120_low_70
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 3706311 - 3706062
Alignment:
| Q |
20 |
tatagctcaaaccatcctaacacaagacctagtcgacgagcttgttcttgttgacaccattcctgacaaactacgaggtgagatgctagatctacaacat |
119 |
Q |
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| T |
3706311 |
tatagctcaaaccatcctaacacaagacctagtcgacgagcttgttcttgttgacgccattcctgacaaactacgaggtgagatgctggatctacaacat |
3706212 |
T |
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| Q |
120 |
gctgcggccttcctcccccgtactaagatccaggcctccactgactattcagtgacgatggggtctgacctctgcatcgtcactgctggggctcgccaga |
219 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |
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| T |
3706211 |
gctgcggccttcctcccccgcactaagatccaggcctccactgactattcagtgacgatgggttccgacctctgcatcgtcactgctggggctcgtcaga |
3706112 |
T |
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| Q |
220 |
ttaatggcgagtccagattgaatttgctacaaaggaatgtagctttgttt |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3706111 |
ttaatggcgagtccagattgaatttgctacaaaggaatgtagctttgttt |
3706062 |
T |
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