View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21120_low_71 (Length: 291)

Name: NF21120_low_71
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21120_low_71
NF21120_low_71
[»] chr5 (8 HSPs)
chr5 (17-223)||(19967310-19967518)
chr5 (27-195)||(41283320-41283489)
chr5 (17-201)||(36491323-36491507)
chr5 (72-224)||(39426464-39426614)
chr5 (147-225)||(13424880-13424958)
chr5 (17-63)||(22927223-22927269)
chr5 (17-65)||(16341571-16341621)
chr5 (20-58)||(13424796-13424834)
[»] chr4 (7 HSPs)
chr4 (17-223)||(28146785-28146995)
chr4 (27-197)||(25967825-25968000)
chr4 (20-223)||(55606406-55606600)
chr4 (17-221)||(38412026-38412227)
chr4 (17-220)||(11440396-11440601)
chr4 (31-107)||(46308490-46308565)
chr4 (17-98)||(13198237-13198317)
[»] chr1 (8 HSPs)
chr1 (17-221)||(32617726-32617930)
chr1 (27-220)||(12990144-12990339)
chr1 (98-197)||(9457470-9457570)
chr1 (98-197)||(9461567-9461667)
chr1 (17-92)||(9457554-9457630)
chr1 (17-92)||(9461651-9461727)
chr1 (67-133)||(14081911-14081977)
chr1 (116-223)||(35811729-35811835)
[»] chr6 (3 HSPs)
chr6 (37-223)||(8169126-8169312)
chr6 (17-144)||(32296249-32296376)
chr6 (17-72)||(10117121-10117176)
[»] chr7 (3 HSPs)
chr7 (20-197)||(25636064-25636241)
chr7 (17-92)||(47363861-47363936)
chr7 (147-224)||(47363960-47364036)
[»] chr2 (7 HSPs)
chr2 (27-224)||(35016552-35016753)
chr2 (102-225)||(17989209-17989333)
chr2 (17-141)||(19263659-19263784)
chr2 (17-92)||(37794808-37794884)
chr2 (160-222)||(20929783-20929845)
chr2 (17-92)||(17989144-17989221)
chr2 (81-142)||(31806161-31806222)
[»] chr8 (5 HSPs)
chr8 (118-196)||(23490207-23490286)
chr8 (17-73)||(23490126-23490182)
chr8 (99-196)||(10473867-10473968)
chr8 (118-177)||(773692-773752)
chr8 (163-223)||(14867560-14867620)
[»] chr3 (2 HSPs)
chr3 (17-221)||(7298926-7299119)
chr3 (118-184)||(50263002-50263069)
[»] scaffold0989 (1 HSPs)
scaffold0989 (138-219)||(2084-2165)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 19967518 - 19967310
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggca-attttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttg 115  Q
    |||||||||||||||||||||||||||||||| | ||||| | |||  ||  |||||||| |||||||  ||||||| ||||||||||||||||||||      
T  19967518 atctcaattgaaaaaatatccggattctatgtctgttgtcgtgaacaacattttttttgcggccgtaacagtgtttcgtcatggctgtaacggcgtttcc 19967419  T
Q  116 ttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgtttttt 214  Q
    | | |||||||||||||| ||||||||||| ||||||||||||| || ||||||| |||||||||| || ||||||||||||| ||||  ||||||||||    
T  19967418 tcgagatttttgttcactctgtaaaaacggtgaaaaacggtaacttcggctacctgtacctttttgccgtggcctttttctcggtaatggactgtttttt 19967319  T
Q  215 aaaaccttg 223  Q
    |||||||||    
T  19967318 aaaaccttg 19967310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 41283489 - 41283320
Alignment:
Q  27 aaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgttgtgattttt 126  Q
    |||||||||| ||||| ||||| ||||||||| | || ||||||||||| ||||||| | |||||| |  ||| ||||||||| ||| |  |||||||||    
T  41283489 aaaaaatatctggattttatgtctattgtcatgagcgacaattttttgcggccgtaacgatgtttcgttgtggttgtaacggcttttcgacgtgattttt 41283390  T
Q  127 gttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttct 195  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||| || |||||||||    
T  41283389 gttcactctgtaaaaacggtgaaaaacggtaacgtccgctacctatacttttttgtcacgacctttttct 41283320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 36491507 - 36491323
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgt 116  Q
    |||| ||||||||||||||||  ||||||||   ||||||||||||| || ||| |||| |||| ||||||||||||||   | || |||| ||||| ||    
T  36491507 atcttaattgaaaaaatatccatattctatgacaattgtcataaacgaca-tttcttgcggccgcaatggtgtttcatcgcagttgaaacgacgtttcgt 36491409  T
Q  117 tgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataa 201  Q
    ||||||||||||||||| | |||||||||  ||||||| ||||||| |||||||||||||| ||||| |||  |||||| ||||||    
T  36491408 tgtgatttttgttcactctataaaaacggtaaaaaacgataacatcggctacctataccttattgtcacggaatttttcccgataa 36491323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 39426464 - 39426614
Alignment:
Q  72 ttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgttgtgatttttgttcactt-gtaaaaacggagaaaaacggtaacatccgctaccta 170  Q
    |||| ||||||| |||||||  ||| |||||||||||| ||| ||   ||| ||||||||||| |||||||| |  |||||| | |||||  |||||  |    
T  39426464 ttgcggccgtaacggtgttttgtcacggctgtaacggcatttcgt---gatctttgttcactttgtaaaaactgtaaaaaacagcaacattggctactaa 39426560  T
Q  171 tacctttttgtcgcggcctttttctcgataatttactgttttttaaaaccttgc 224  Q
    ||||||||||| ||||||||||||||| |||   ||||||||||||||||||||    
T  39426561 tacctttttgttgcggcctttttctcggtaacagactgttttttaaaaccttgc 39426614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 13424880 - 13424958
Alignment:
Q  147 aaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaaccttgct 225  Q
    |||||| |||||||| ||||||||||||||||| |||||| |||||||||| ||||  ||  | |||||||||||||||    
T  13424880 aaaaacagtaacatcggctacctatacctttttttcgcggtctttttctcggtaatggaccatattttaaaaccttgct 13424958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 22927223 - 22927269
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacg 63  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  22927223 atctcaattgaaaaaatatccggattttatgtctattgtcatgaacg 22927269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 16341571 - 16341621
Alignment:
Q  17 atctcaattgaaaa--aatatccggattctatgtttattgtcataaacggc 65  Q
    ||||||||||||||  |||||||||||||||||| ||||||||| ||||||    
T  16341571 atctcaattgaaaaaaaatatccggattctatgtctattgtcatgaacggc 16341621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 13424796 - 13424834
Alignment:
Q  20 tcaattgaaaaaatatccggattctatgtttattgtcat 58  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  13424796 tcaattgaaaaaatatccggattctatgtctactgtcat 13424834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 28146995 - 28146785
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggc---aattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttt 113  Q
    ||||||||||||||||||||| |||||||||| ||||||||| ||||||     |||||||| ||||||| |||||||| ||   ||||||||| |||||    
T  28146995 atctcaattgaaaaaatatccagattctatgtctattgtcatgaacggccttttttttttgcggccgtaacggtgtttcgtcgcagctgtaacgacgttt 28146896  T
Q  114 tgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgtttt 212  Q
    ||| |||||||||||||||| ||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||  |||   || |||||    
T  28146895 tgtcgtgatttttgttcactctgtaaaaacggtgaaaaacggtaatgtccgctacctatacctttttgttgcggcctttttctccgtaacagaccgtttt 28146796  T
Q  213 ttaaaaccttg 223  Q
    |||||||||||    
T  28146795 ttaaaaccttg 28146785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 25968000 - 25967825
Alignment:
Q  27 aaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgttgtgattttt 126  Q
    |||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||| |||||||| ||  || ||||||||| ||| || |||||||||    
T  25968000 aaaaaatatccgaattctatgtctgttgtcatgaatggcaattttttgcagccgtaacggtgtttcgtcgcggttgtaacggcatttcgtcgtgattttt 25967901  T
Q  127 gttcact-----tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcg 197  Q
    |||||||     ||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||| ||||||    
T  25967900 gttcactctgtatgtaaaaacggtggaaaacggtaacgtccgctacctatacctttttgtcgcagccttattctcg 25967825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 55606406 - 55606600
Alignment:
Q  20 tcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgttgt 119  Q
    ||||||||||||||||  |||||| |||| ||||||||| ||| | | |||||||| ||||||| |||||||||||  ||||||||||| |||| || ||    
T  55606406 tcaattgaaaaaatatttggattccatgtctattgtcatgaacagaatttttttgcggccgtaacggtgtttcatcgcggctgtaacggtgtttcgtcgt 55606505  T
Q  120 gatttttgttcacttgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaac 219  Q
    ||||||||||||||        | | ||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||   ||||||||||| |||    
T  55606506 gatttttgttcact--------cagtgaaaaacggtaacgtccactacctatacctttttgtcg-ggcctttttctcggtaacggactgttttttagaac 55606596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 38412026 - 38412227
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgt 116  Q
    |||| ||||||||| |||| | ||||   ||| ||||||||| |||| || | |||||| |||||||||||||||| ||  ||||||||| |||||| ||    
T  38412026 atcttaattgaaaagatattcagatttggtgtctattgtcatgaacgacattcttttgcggccgtaatggtgtttcgtcgcggctgtaacagcgtttcgt 38412125  T
Q  117 tgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgtttttta 215  Q
      ||||||||||||||| ||| |||||||    || ||||||| || |||||||||| ||||||||||| |||||||||||| ||||  ||  |||||||    
T  38412126 cttgatttttgttcactctgtgaaaacgg---taaccggtaacgtcggctacctata-ctttttgtcgccgcctttttctcggtaatggaccatttttta 38412221  T
Q  216 aaacct 221  Q
    ||||||    
T  38412222 aaacct 38412227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 11440601 - 11440396
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgt 116  Q
    |||| |||||||||| |||||||| | | ||| ||||||||| || | || |||||||  |  |||| |||||||||||  |||||||| ||| ||| ||    
T  11440601 atcttaattgaaaaattatccggactatgtgtctattgtcatgaatgacatttttttgtggttgtaacggtgtttcatcgaggctgtaatggcttttcgt 11440502  T
Q  117 tgtgatttttgttcact-tgtaaaaacggagaaaaa-cggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgtttttt 214  Q
     || | ||||||||||| ||||||||| |  ||||| || ||| |||  ||||||||||||||||| ||||||||||||||||||||   || |||||||    
T  11440501 cgtaacttttgttcactgtgtaaaaacagtaaaaaatcgataatatcgactacctatacctttttgccgcggcctttttctcgataaaagaccgtttttt 11440402  T
Q  215 aaaacc 220  Q
    ||||||    
T  11440401 aaaacc 11440396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 46308490 - 46308565
Alignment:
Q  31 aatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacg 107  Q
    ||||||| |||||||||| ||||||||| |||  ||||||||||||| |||||| |||||||||||||| |||||||    
T  46308490 aatatcccgattctatgtctattgtcatgaacaacaattttttgcagtcgtaat-gtgtttcatcatggttgtaacg 46308565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 13198237 - 13198317
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatg 98  Q
    |||||||||||||||||||||||||||||||| | |||| | |||||||| ||||||  | ||||||| ||||||| |||||    
T  13198237 atctcaattgaaaaaatatccggattctatgtcttttgttacaaacggcattttttttta-ccgtaatcgtgtttcgtcatg 13198317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 32617726 - 32617930
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgt 116  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||| ||| || ||||  ||||||| |||||||| ||  |||||||||  ||||| ||    
T  32617726 atctcaattgaaaaaatacccggattctatgtctattgtcatgaactgcatttctttgg-gccgtaacggtgtttcgtcgcggctgtaacaacgtttcgt 32617824  T
Q  117 tgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgtttttta 215  Q
     || ||||||||||||| | ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||   || ||||||||    
T  32617825 cgtaatttttgttcactctataaaaacggtgaaaaacggtaacgtccgctacctatacctttttgtggcggcctttttctcggtaaccgaccgtttttta 32617924  T
Q  216 aaacct 221  Q
    ||||||    
T  32617925 aaacct 32617930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 220
Target Start/End: Complemental strand, 12990339 - 12990144
Alignment:
Q  27 aaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgttgtgattttt 126  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||||  || |||| ||| |||| ||   |||||||||  |||| ||||||||||||    
T  12990339 aaaaaatatccagattctatgtctattgtcataaacgacaattttttgtggctgtaacggtatttcgtcgcagctgtaacgatgtttcgttgtgattttt 12990240  T
Q  127 gttcact-tgtaaaaacgg-agaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaacc 220  Q
    |||||||   |||||||||   |||||||||||| ||| |||||||||||||||| |||| |||||||||||| |||   || |||||||||||||    
T  12990239 gttcactccataaaaacggtcaaaaaacggtaacgtccactacctatacctttttatcgcagcctttttctcggtaacgaaccgttttttaaaacc 12990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 9457570 - 9457470
Alignment:
Q  98 ggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctc 196  Q
    |||||||||||||||| || |||||||||||||||| || ||   ||| ||||||||| ||| |||||| |||||||||||||||||||||||||| |||    
T  9457570 ggctgtaacggcgtttcgtcgtgatttttgttcactctgaaatttcggtgaaaaacggcaacgtccgctgcctatacctttttgtcgcggccttttactc 9457471  T
Q  197 g 197  Q
    |    
T  9457470 g 9457470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 9461667 - 9461567
Alignment:
Q  98 ggctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctc 196  Q
    |||||||||||||||| || |||||||||||||||| || ||   ||| ||||||||| ||| |||||| |||||||||||||||||||||||||| |||    
T  9461667 ggctgtaacggcgtttcgtcgtgatttttgttcactctgaaatttcggtgaaaaacggcaacgtccgctgcctatacctttttgtcgcggccttttactc 9461568  T
Q  197 g 197  Q
    |    
T  9461567 g 9461567  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 9457630 - 9457554
Alignment:
Q  17 atctcaattgaaaaaa-tatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttc 92  Q
    |||||||||||||||| |||| ||||||||||| ||||||||| ||||||| |||||||| || |||| || |||||    
T  9457630 atctcaattgaaaaaaatatctggattctatgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttc 9457554  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 9461727 - 9461651
Alignment:
Q  17 atctcaattgaaaaaa-tatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttc 92  Q
    |||||||||||||||| |||| ||||||||||| ||||||||| ||||||| |||||||| || |||| || |||||    
T  9461727 atctcaattgaaaaaaatatctggattctatgtctattgtcatgaacggcatttttttgcggctgtaacggcgtttc 9461651  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 14081911 - 14081977
Alignment:
Q  67 attttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgttgtgatttttgttcact 133  Q
    ||||||||| ||||||| |||||||||||| | ||||||| |||||| || ||||||||| ||||||    
T  14081911 attttttgcggccgtaacggtgtttcatcacgactgtaacagcgtttcgtcgtgatttttattcact 14081977  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 35811835 - 35811729
Alignment:
Q  116 ttgtgatttttgttcacttgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgtttttta 215  Q
    |||||||||||||||||| || |||| |||||||||||||| |  || ||||||||| |||||||| | ||||  |||  |  ||||  |||||||||||    
T  35811835 ttgtgatttttgttcact-gttaaaatggagaaaaacggtatcggccactacctatatctttttgttgtggccgattttgcagtaatggactgtttttta 35811737  T
Q  216 aaaccttg 223  Q
    ||||||||    
T  35811736 aaaccttg 35811729  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 8169126 - 8169312
Alignment:
Q  37 cggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgttgtgatttttgttcact-tg 135  Q
    |||||||||||| ||||||||| ||||||| |||||||  ||||||| |||||||| ||  |||||||||| ||||| || |||||||||||||||| ||    
T  8169126 cggattctatgtctattgtcatgaacggcatttttttgtggccgtaacggtgtttcgtcgcggctgtaacgacgtttcgtcgtgatttttgttcactctg 8169225  T
Q  136 taaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaaccttg 223  Q
    ||||||  | ||||||||||||| ||  ||||||||||| |||||||| | ||||||||||| |||    | ||||||||||||||||    
T  8169226 taaaaatagtgaaaaacggtaacgtcgactacctatacc-ttttgtcgtgacctttttctcggtaacgggcagttttttaaaaccttg 8169312  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 32296376 - 32296249
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgt 116  Q
    ||||||||||||||||||| | |||| | ||| ||||||||| ||| || ||||||||  |||||||   |||||| ||| |||  |||||| ||||  |    
T  32296376 atctcaattgaaaaaatattcagattttgtgtctattgtcatgaaccgc-attttttgtggccgtaacaatgtttcgtcacggcgataacggtgtttcat 32296278  T
Q  117 tgtgatttttgttcact-tgtaaaaacgg 144  Q
     |||||||||||||||| |||||||||||    
T  32296277 cgtgatttttgttcactctgtaaaaacgg 32296249  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 10117176 - 10117121
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttt 72  Q
    |||||||||| ||||||||||||||||| ||| ||||||||| |||| || |||||    
T  10117176 atctcaattggaaaaatatccggattctgtgtctattgtcatgaacgacatttttt 10117121  T

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Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 25636064 - 25636241
Alignment:
Q  20 tcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgttgt 119  Q
    ||||||||||||||| ||||||| | ||||||||||||| |||| || |||||| | ||||||| |||||||| |   |||| | | ||| ||| || ||    
T  25636064 tcaattgaaaaaatacccggattatgtgtttattgtcatgaacgaca-ttttttacggccgtaacggtgtttcgttgcggctattatggcttttggtcgt 25636162  T
Q  120 gatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcg 197  Q
    |||||||||||||| |||| |||||| ||||||| ||| ||||  ||||||||||||||||||||||||||||||||||    
T  25636163 gatttttgttcactatgtagaaacggtgaaaaacagtagcatcatctacctatacctttttgtcgcggcctttttctcg 25636241  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 47363861 - 47363936
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttc 92  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||  ||||||||    
T  47363861 atctcaattgaaaaaatatccggattctatgtctattgtcatgaacggcaattttttgcggtcgtatcggtgtttc 47363936  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 47363960 - 47364036
Alignment:
Q  147 aaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaaccttgc 224  Q
    |||||||||||| ||||||||||||| |||||||| | ||||||||||||| |||   || ||||||||||| |||||    
T  47363960 aaaaacggtaacgtccgctacctata-ctttttgtggtggcctttttctcggtaacggaccgttttttaaaatcttgc 47364036  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 35016552 - 35016753
Alignment:
Q  27 aaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgttgtgattttt 126  Q
    |||||| ||||| ||||||||| ||||||||  || |||||||||||||||| ||||||||||||| |||  ||||||| ||  |||||| |||    ||    
T  35016552 aaaaaaaatccgaattctatgtctattgtcaagaatggcaattttttgcagctgtaatggtgtttcgtcacagctgtaatggtattttgtcgtg----tt 35016647  T
Q  127 gttcact--------tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaa 218  Q
    |||||||        | ||||||| | ||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||   || |||||||||||    
T  35016648 gttcactctataatctataaaaacagtgaagaacggcaacattcgctacctatacctttttgtcgcggccattttctcgataacggacggttttttaaaa 35016747  T
Q  219 ccttgc 224  Q
    ||||||    
T  35016748 ccttgc 35016753  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 17989209 - 17989333
Alignment:
Q  102 gtaacggcgttttgttgtgatttttgttcactt-gtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgata 200  Q
    ||||||| |||| || ||||||||||||||||| |||||||||| ||||||||||||  | |||||||||||||||||||| | |||||||| || | ||    
T  17989209 gtaacggtgtttcgtcgtgatttttgttcacttagtaaaaacggtgaaaaacggtaatgttcgctacctatacctttttgttgtggccttttccttggta 17989308  T
Q  201 atttactgttttttaaaaccttgct 225  Q
    |   ||  |||||||||||||||||    
T  17989309 acggaccattttttaaaaccttgct 17989333  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 19263784 - 19263659
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgt 116  Q
    ||||||||||||| ||||||  |||||||| | ||||||||| |||| || |||||||| ||||||| ||||||| ||  ||||| ||| | ||||| ||    
T  19263784 atctcaattgaaacaatatcttgattctatatctattgtcatgaacgacagttttttgcggccgtaacggtgtttaattgtggctataatgacgtttcgt 19263685  T
Q  117 tgtgatttttgttcac-ttgtaaaaa 141  Q
      |||||||||||||| |||||||||    
T  19263684 catgatttttgttcacattgtaaaaa 19263659  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 37794808 - 37794884
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggca-attttttgcagccgtaatggtgtttc 92  Q
    ||||||||||||||||||||| |||||||||| | ||||||| |||| ||  |||||||||||||||| ||||||||    
T  37794808 atctcaattgaaaaaatatccagattctatgtcttttgtcatgaacgacattttttttgcagccgtaacggtgtttc 37794884  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 20929845 - 20929783
Alignment:
Q  160 tccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaacctt 222  Q
    ||||||||||||||||||||| |||| ||||||||| | |||   ||||||||||||||||||    
T  20929845 tccgctacctatacctttttggcgcgacctttttcttggtaacggactgttttttaaaacctt 20929783  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 17989144 - 17989221
Alignment:
Q  17 atctcaattg--aaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttc 92  Q
    ||||||||||  |||||| |||| |||||||||| |||| |||| ||||||  |||||||| ||||||| ||||||||    
T  17989144 atctcaattgaaaaaaaaaatccagattctatgtctattatcatgaacggctgttttttgcggccgtaacggtgtttc 17989221  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 31806161 - 31806222
Alignment:
Q  81 taatggtgtttcatcatggctgtaacggcgttttgttgtgatttttgttcacttgtaaaaac 142  Q
    |||||||||||||||| ||||||||||| |||| |  ||||||||||| |  ||||||||||    
T  31806161 taatggtgtttcatcacggctgtaacggtgtttcgacgtgatttttgtccctttgtaaaaac 31806222  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 23490207 - 23490286
Alignment:
Q  118 gtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctc 196  Q
    |||||||||||||||| |||||||| || |||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  23490207 gtgatttttgttcactctgtaaaaatggtgaaaaatggtaacttcggctacctatacctttttgtcgcggcctttttctc 23490286  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 23490126 - 23490182
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaatttttt 73  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||    
T  23490126 atctcaattgaaaaaatatccggatgctatgtctattgtcatgaacggcattttttt 23490182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 10473867 - 10473968
Alignment:
Q  99 gctgtaacggcgttttgttgtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctatacc---tttttgtcgcggcctttttc 194  Q
    ||||||| | ||||| || |||||||||||||||| ||||||||| | ||||||| ||||  || ||||||||||||   |||||||| |||||||||||    
T  10473867 gctgtaatgtcgtttcgtcgtgatttttgttcactctgtaaaaacagtgaaaaacagtaatgtcggctacctataccacctttttgtcacggcctttttc 10473966  T
Q  195 tc 196  Q
    ||    
T  10473967 tc 10473968  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 773752 - 773692
Alignment:
Q  118 gtgatttttgttcact-tgtaaaaacggagaaaaacggtaacatccgctacctataccttt 177  Q
    |||||||||||||||| ||| ||||| ||||||||||||| ||||| | ||||||||||||    
T  773752 gtgatttttgttcactctgttaaaacagagaaaaacggtatcatccaccacctataccttt 773692  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 14867560 - 14867620
Alignment:
Q  163 gctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaaccttg 223  Q
    |||||||||| |||| ||||||||||||||||||  |||   || ||||||||||||||||    
T  14867560 gctacctatatctttctgtcgcggcctttttctcagtaacggaccgttttttaaaaccttg 14867620  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 7299119 - 7298926
Alignment:
Q  17 atctcaattgaaaaaatatccggattctatgtttattgtcataaacggcaattttttgcagccgtaatggtgtttcatcatggctgtaacggcgttttgt 116  Q
    |||||||||||||||||||||||||| | | | || |||||| ||||||| |||||||| ||||||| ||| |||| ||   ||||||||| ||||| ||    
T  7299119 atctcaattgaaaaaatatccggattttgtctctagtgtcatgaacggca-ttttttgcggccgtaaaggtctttcgtcgcagctgtaacgccgtttcgt 7299021  T
Q  117 tgtgatttttgttcac-ttgtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgtttttta 215  Q
    |||||||||||||||| ||||          |||| ||||||| || |||||| ||| |||||||||||||||||||||||| |||   || ||||||||    
T  7299020 tgtgatttttgttcactttgt----------aaaagcggtaacgtcggctaccgata-ctttttgtcgcggcctttttctcggtaacggaccgtttttta 7298932  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 50263002 - 50263069
Alignment:
Q  118 gtgatttttgttcactt-gtaaaaacggagaaaaacggtaacatccgctacctatacctttttgtcgc 184  Q
    ||||||||||||||||  || ||||| ||||||||||||| ||||| | |||||||||||| ||||||    
T  50263002 gtgatttttgttcactccgttaaaacagagaaaaacggtatcatccaccacctatacctttatgtcgc 50263069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 2084 - 2165
Alignment:
Q  138 aaaacggagaaaaacggtaacatccgctacctatacctttttgtcgcggcctttttctcgataatttactgttttttaaaac 219  Q
    |||||||  |||||||||||| ||||||| |  || |||||||||||||||||||||||| |||   || ||||||||||||    
T  2084 aaaacggtaaaaaacggtaacgtccgctatcattaactttttgtcgcggcctttttctcggtaacagaccgttttttaaaac 2165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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