View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_74 (Length: 284)
Name: NF21120_low_74
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 12842555 - 12842816
Alignment:
| Q |
5 |
aaaggggtttatgtatgtcacaaggtaataaacccattcaaaataacaatcagtaatcttcaaagtaactaatcgatttgaataaaagactgtatttaat |
104 |
Q |
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| T |
12842555 |
aaaggggtttatgtatgtcacaaggtaataaacccattcaaaataacaatcagtaatcttcaaagtaaccaacagatttgaataaaagactgtatttaat |
12842654 |
T |
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| Q |
105 |
taactttgacttagtcaaactaaaactaagtactattattctacataataatgtatatatgggtcaattactcatgaattccaatagtagattctaataa |
204 |
Q |
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| T |
12842655 |
taactttaccttagtcaaactaaaactaagtactattattctac---ataatgtatatatgggtcaattactcatgaattccaatagtagattctaataa |
12842751 |
T |
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| Q |
205 |
ttcaactaaagtgtaaaattagttttggtagttgaccagaaaatattgggacttaatttttctgtg |
270 |
Q |
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| T |
12842752 |
-tcaactaaagtgtaaaattagttttggtagttgaccagaaaatattgggacttaatttttctgtg |
12842816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 13124871 - 13124974
Alignment:
| Q |
158 |
tatatatgggtcaattactcatgaattccaatagtagattctaataattcaactaaagtgtaaaattagttttggtagttgaccagaaaatattgggact |
257 |
Q |
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| T |
13124871 |
tatatatgggtcaattactcaagaattccaatagtagattctaataat-caactaaagtgtaaaattagttttggtagttgaccagaaaatattgggact |
13124969 |
T |
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| Q |
258 |
taatt |
262 |
Q |
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| T |
13124970 |
taatt |
13124974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 125 - 260
Target Start/End: Complemental strand, 12862804 - 12862673
Alignment:
| Q |
125 |
taaaactaagtactattattctacataataatgtatatatgggtcaattactcatgaattccaatagtagattctaataattcaactaaagtgtaaaatt |
224 |
Q |
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| T |
12862804 |
taaaactaagcaatattattcaacataaa---gtagatatgggtcaattactcatgaattccaacagtagattctaataat-caactaaagtgtaaaatt |
12862709 |
T |
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| Q |
225 |
agttttggtagttgaccagaaaatattgggacttaa |
260 |
Q |
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| T |
12862708 |
agttttggtagttgaccagaaaatattgggacttaa |
12862673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 12862951 - 12862826
Alignment:
| Q |
5 |
aaaggggtttatgtatgtcacaaggtaataaacccattcaaaataacaatcagtaatcttcaaagtaactaatcgatttgaataaaagactgtatttaat |
104 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||| | |
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| T |
12862951 |
aaaggggtttatgcatgtcacaaggtaataaacccattcaaaataactatcagtaatcttcaaagtaactaaccgaattgaataaaagactgtat----t |
12862856 |
T |
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| Q |
105 |
taactttgacttagtcaaactaaaactaag |
134 |
Q |
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|||| |||| ||| |||||||||||||||| |
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| T |
12862855 |
taaccttgatttaatcaaactaaaactaag |
12862826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 12841223 - 12841365
Alignment:
| Q |
5 |
aaaggggtttatgtatgtcacaaggtaataaacccattcaaaataacaa----tcagtaatcttcaaagtaactaatcgatttgaataaaagactgt--a |
98 |
Q |
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||||||||||| ||| |||||||| ||||||||||||||||||||| | ||| |||||||| | ||| ||| ||| ||||||||| ||||| | |
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| T |
12841223 |
aaaggggtttaattatatcacaaggaaataaacccattcaaaataactaactatcaataatcttctacctaattaaccgacttgaataaatgactgctca |
12841322 |
T |
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| Q |
99 |
tttaattaactttgacttagtcaaactaaaactaagtactatt |
141 |
Q |
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| T |
12841323 |
tctaattaagtttgacttagtcaaactaaaactaagtattatt |
12841365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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