View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_75 (Length: 283)
Name: NF21120_low_75
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 30077721 - 30077995
Alignment:
| Q |
1 |
tcgaggaaaaagaaaattcacctcctccgtctccgatcagcagcatactgcgaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcg |
100 |
Q |
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| T |
30077721 |
tcgaggaaaaagaaaattcacctcctccgtctccgatcagcagcatactgcgaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcg |
30077820 |
T |
|
| Q |
101 |
gggagtttcgacaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30077821 |
gggagtttcgacaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcat |
30077920 |
T |
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| Q |
201 |
ctccgaatccttgtactcacacaaacaaatggaacacgtggtgttctgtcctaaaacagttgcgctgtctctgct |
275 |
Q |
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| T |
30077921 |
ctccgaatccttgtactcacacaaacaaatggaacacgtggtgttctgtcctaaaacagttgcgctgtctctgct |
30077995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 30084255 - 30084356
Alignment:
| Q |
111 |
acaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatcc |
210 |
Q |
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|||||| ||||| || ||||||| ||||||||||| ||||| |||| | ||||||| || || |||||| ||||||||||||| |||||||| ||| |
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| T |
30084255 |
acaaactggacacgaaccattaaccttcaaccatgtatcaacacaatctcgatgaaaatagtggtgacattgcggcatcatcctcaaaatctccgattcc |
30084354 |
T |
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| Q |
211 |
tt |
212 |
Q |
| |
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|| |
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| T |
30084355 |
tt |
30084356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 52 - 240
Target Start/End: Original strand, 10810163 - 10810351
Alignment:
| Q |
52 |
gaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcggggagtttcgacaaacgggacaagagccattaagcttcaaccatgaatcaa |
151 |
Q |
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||||| |||||||| ||||| | ||||||||| | |||||| || | || ||||| ||||||||||||||||| || ||||| |||||||| ||||||| |
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| T |
10810163 |
gaaagtggaacaacttcttgtaacggagtagataacggcgttggcataggtgagttccgacaaacgggacaagaaccgttaagtttcaaccacgaatcaa |
10810262 |
T |
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| Q |
152 |
gacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatccttgtactcacacaaacaaatggaacacgtg |
240 |
Q |
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|||||||||| ||||| || || | |||||| ||||||||||| | |||||||||||||||||||||||||||||| || ||||||||| |
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| T |
10810263 |
gacaacataggtgaaaatagtgtctacattccggcatcatccttaacatctccgaatccttgtactcacacaaacagatcgaacacgtg |
10810351 |
T |
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