View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_76 (Length: 283)
Name: NF21120_low_76
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_76 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 2111461 - 2111736
Alignment:
| Q |
15 |
agggataatgccaaagggaaaatgaggagtgatatgagggagttgttgatggcgaaagagtctgctagaaactgaagcgtcaagaggaatagggtcacca |
114 |
Q |
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| T |
2111461 |
agggataatgccaaagggaaaatgaggagtgatatgagggagttgttgatggcgatagagtctgctagaaactgaagcgtcaagaggaatagggtcacca |
2111560 |
T |
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| Q |
115 |
ggaacaaacttggcccaaccatcgaggttttgtggagaggatatgtttaagtcccagaatgatgaatcaatggctgttcttagcttagccattgatgatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2111561 |
ggaacaaacttggcccaaccatcgaggttttgtggagaggatatgtttaagtcccagaatgatgaatcaatggctgttcttagcttagccattgatgatg |
2111660 |
T |
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| Q |
215 |
ac---------aacaacaatgaa-----tgaagtgaagtgaagaggttttgtttttgttgaggtttaacctctctg |
276 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2111661 |
acaacaacaagaacaacaatgaatgaagtgaagtgaagtgaagaggttttgtttttgttgaggtttaacctctctg |
2111736 |
T |
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