View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21120_low_8 (Length: 646)

Name: NF21120_low_8
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21120_low_8
NF21120_low_8
[»] chr8 (11 HSPs)
chr8 (1-347)||(41413839-41414185)
chr8 (417-544)||(41414255-41414383)
chr8 (517-586)||(27990138-27990205)
chr8 (517-586)||(28047440-28047507)
chr8 (20-94)||(9767467-9767541)
chr8 (536-582)||(32242464-32242510)
chr8 (532-586)||(7253155-7253209)
chr8 (533-586)||(32965911-32965964)
chr8 (534-567)||(34054111-34054144)
chr8 (534-583)||(40550877-40550926)
chr8 (534-566)||(21276245-21276277)
[»] chr2 (9 HSPs)
chr2 (1-347)||(4566729-4567075)
chr2 (432-589)||(4567192-4567350)
chr2 (534-587)||(2279305-2279358)
chr2 (417-466)||(4567145-4567194)
chr2 (535-586)||(8961340-8961391)
chr2 (535-582)||(3096899-3096946)
chr2 (534-569)||(40813740-40813775)
chr2 (535-582)||(41055763-41055810)
chr2 (534-582)||(9113132-9113177)
[»] chr3 (17 HSPs)
chr3 (1-347)||(5449350-5449696)
chr3 (432-537)||(5449127-5449233)
chr3 (534-586)||(22004058-22004110)
chr3 (534-586)||(22011575-22011627)
chr3 (534-586)||(27949173-27949225)
chr3 (417-466)||(5449231-5449280)
chr3 (539-586)||(26959980-26960027)
chr3 (523-586)||(27657922-27657985)
chr3 (529-584)||(8474935-8474990)
chr3 (522-565)||(47668295-47668338)
chr3 (515-586)||(51986772-51986843)
chr3 (534-566)||(30593713-30593745)
chr3 (532-567)||(12009875-12009910)
chr3 (535-582)||(21218516-21218563)
chr3 (539-586)||(21219663-21219710)
chr3 (536-573)||(33477613-33477650)
chr3 (534-587)||(52288652-52288705)
[»] chr4 (11 HSPs)
chr4 (1-347)||(39111353-39111699)
chr4 (417-587)||(39111769-39111939)
chr4 (535-586)||(35346300-35346351)
chr4 (534-586)||(33017689-33017741)
chr4 (536-586)||(5826669-5826719)
chr4 (535-582)||(48401212-48401259)
chr4 (536-582)||(34617591-34617637)
chr4 (539-573)||(52106247-52106281)
chr4 (534-567)||(33433721-33433754)
chr4 (535-564)||(39159017-39159046)
chr4 (535-587)||(38383355-38383407)
[»] chr1 (7 HSPs)
chr1 (1-94)||(49604605-49604698)
chr1 (534-587)||(39156770-39156823)
chr1 (535-587)||(40042456-40042508)
chr1 (536-586)||(18628264-18628314)
chr1 (534-573)||(4483808-4483847)
chr1 (520-586)||(47125587-47125653)
chr1 (537-582)||(46908237-46908282)
[»] chr7 (8 HSPs)
chr7 (522-586)||(328172-328236)
chr7 (532-584)||(32839176-32839228)
chr7 (522-586)||(26762372-26762436)
chr7 (536-586)||(26049740-26049790)
chr7 (20-52)||(47161109-47161141)
chr7 (539-586)||(2704152-2704199)
chr7 (535-582)||(7702586-7702633)
chr7 (534-586)||(48505579-48505630)
[»] scaffold0040 (1 HSPs)
scaffold0040 (534-587)||(68252-68305)
[»] chr5 (4 HSPs)
chr5 (539-586)||(6383753-6383800)
chr5 (535-586)||(16049622-16049673)
chr5 (533-567)||(1012821-1012855)
chr5 (538-584)||(18923726-18923772)
[»] chr6 (1 HSPs)
chr6 (535-583)||(1366299-1366347)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-172; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 41413839 - 41414185
Alignment:
Q  1 catctagtggcggcattaagaacagtttgactgagaagcaggagagagaaagtagcaacgccgtagacagtagaagcgtcggtggtgtagacaccgccgt 100  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||  ||||| ||||||||||||||||||||||||||||||||    
T  41413839 catctagtggcggcgttaagaacagtttgactaagaagcaggagagagaaagcagcaacgttgtagatagtagaagcgtcggtggtgtagacaccgccgt 41413938  T
Q  101 agacagtttttacaatttttgctgatagggaaaatggatcggatgttgtttcaagaatttgaatttctataacaatggtgattattgattgattccattt 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41413939 agacagtttttacaatttttgctgataggaaaaatggatcggatgttgtttcaagaatttgaatttgtataacaatggtgattattgattgattccattt 41414038  T
Q  201 tcttaccgtttttgcttttcttgtgattgattccagaatttacatcaatttattttcttctactgtaaaaatacaatttttgttgacaaaggtgtggata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41414039 tcttaccgtttttgcttttcttgtgattgattccagaatttacaccaatttattttcttctactgtaaaaatacaatttttgttgacaaaggtgtggata 41414138  T
Q  301 tttccaaaattaaaatgaacctacagtgtataataagaactctcgac 347  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  41414139 tttccaaaattaaaatgaacctacagtgtgtaataagaactctcgac 41414185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 417 - 544
Target Start/End: Original strand, 41414255 - 41414383
Alignment:
Q  417 tgatctgcatatacgtttctctctcatccaattgcaatgcttttcactttttatcaataaaccgttgaattaattcaataactcttatttatttagcaac 516  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  41414255 tgatctgcatatacgtttctctctcattcaattgcaatgcttttctctttttatcaataaaccgttgaattaatccaataactcctatttatttagcaac 41414354  T
Q  517 caaac-aaaaaataatagtcaagtctcct 544  Q
    ||||| |||||||| ||||||| ||||||    
T  41414355 caaacaaaaaaatagtagtcaaatctcct 41414383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 517 - 586
Target Start/End: Original strand, 27990138 - 27990205
Alignment:
Q  517 caaacaaaaaataatagtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  27990138 caaacaaaaaataat--tcaagtctcctacggtaggagacctaacgaggtctcccaccgtagcctttgcc 27990205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 517 - 586
Target Start/End: Original strand, 28047440 - 28047507
Alignment:
Q  517 caaacaaaaaataatagtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  28047440 caaacaaaaaataat--tcaagtctcctacggtaggagacctaacgaggtctcccaccgtagcctttgcc 28047507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 9767541 - 9767467
Alignment:
Q  20 gaacagtttgactgagaagcaggagagagaaagtagcaacgccgtagacagtagaagcgtcggtggtgtagacac 94  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||| || ||||||||  ||||||| ||||    
T  9767541 gaacagtttgactgagaagcaggagagagaaagcagcaacgccgaagacggtggaagcgtccatggtgtaaacac 9767467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 536 - 582
Target Start/End: Complemental strand, 32242510 - 32242464
Alignment:
Q  536 aagtctcctacggtaggagacctaaagaggtctcccactgtagcctt 582  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  32242510 aagtctcctacggtaggagacctaaagaggtctcccaccgtagcctt 32242464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 532 - 586
Target Start/End: Original strand, 7253155 - 7253209
Alignment:
Q  532 agtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    ||||||||||||||||||||||||||||||||| || || || ||||||||||||    
T  7253155 agtcaagtctcctacggtaggagacctaaagagatcgcctaccgtagcctttgcc 7253209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 586
Target Start/End: Complemental strand, 32965964 - 32965911
Alignment:
Q  533 gtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||||||||||||||||||||||| ||| |  || || ||||||||||||    
T  32965964 gtcaagtctcctacggtaggagacctaatgagattgcctaccgtagcctttgcc 32965911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 567
Target Start/End: Original strand, 34054111 - 34054144
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtc 567  Q
    |||||||||||| |||||||||||||||||||||    
T  34054111 tcaagtctcctatggtaggagacctaaagaggtc 34054144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 583
Target Start/End: Complemental strand, 40550926 - 40550877
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagccttt 583  Q
    ||||||||||||||||||||||| | ||||||||||| || ||| |||||    
T  40550926 tcaagtctcctacggtaggagactttaagaggtctcctaccgtaaccttt 40550877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 566
Target Start/End: Original strand, 21276245 - 21276277
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggt 566  Q
    |||||||||||||||||||||||| ||||||||    
T  21276245 tcaagtctcctacggtaggagacccaaagaggt 21276277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 4566729 - 4567075
Alignment:
Q  1 catctagtggcggcattaagaacagtttgactgagaagcaggagagagaaagtagcaacgccgtagacagtagaagcgtcggtggtgtagacaccgccgt 100  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  4566729 catctagtggcggtgttaagaacagtttgactgagaagcaggagagagaaaacagcaatgccgtagacagtagaagcgtcagtggtgtagacaccaccgt 4566828  T
Q  101 agacagtttttacaatttttgctgatagggaaaatggatcggatgttgtttcaagaatttgaatttctataacaatggtgattattgattgattccattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4566829 agacagtttttacaatttttgctgatagggaaaatggatcggatgttgtttcaagaatttgaatttgtataacaatggtgattattgattgattccattt 4566928  T
Q  201 tcttaccgtttttgcttttcttgtgattgattccagaatttacatcaatttattttcttctactgtaaaaatacaatttttgttgacaaaggtgtggata 300  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  4566929 tcttacagtttttgcttttcctgtgattgattccagaatttacaccaatttattttcttctatggtaaaaatacaatttttgttgacaaaggtgtggata 4567028  T
Q  301 tttccaaaattaaaatgaacctacagtgtataataagaactctcgac 347  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  4567029 tttccaaaattaaaatgaacctacagtgtgtaataagaactctcgac 4567075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 432 - 589
Target Start/End: Original strand, 4567192 - 4567350
Alignment:
Q  432 tttctctctcatccaattgcaatgcttttcactttttatcaataaaccgttgaattaattcaataactcttatttatttagcaaccaaac-aaaaaataa 530  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||    
T  4567192 tttctctctcctccaattgcaatgcttttctctttttatcaataaaccgttggattaatccaataactcctatttatttagcaaccaaacaaaaaaataa 4567291  T
Q  531 tagtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcccta 589  Q
    || |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  4567292 taatcaagtctcctacggtaggagacctaaaaaggtctcccaccgtagcctttgcccta 4567350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 2279358 - 2279305
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgccc 587  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  2279358 tcaagtctcatacggtaggagacctaaagaggtctcccaccgtagcctttgccc 2279305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 417 - 466
Target Start/End: Original strand, 4567145 - 4567194
Alignment:
Q  417 tgatctgcatatacgtttctctctcatccaattgcaatgcttttcacttt 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4567145 tgatctgcatatacgtttctctctcatccaattgcaatgcttttctcttt 4567194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 586
Target Start/End: Complemental strand, 8961391 - 8961340
Alignment:
Q  535 caagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||| ||||||||||||||||||||| |||||||| ||| ||||||||    
T  8961391 caagtctcttacggtaggagacctaaagagatctcccaccgtaacctttgcc 8961340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 582
Target Start/End: Complemental strand, 3096946 - 3096899
Alignment:
Q  535 caagtctcctacggtaggagacctaaagaggtctcccactgtagcctt 582  Q
    |||||||||||||||||||||||||| |||||| || || ||||||||    
T  3096946 caagtctcctacggtaggagacctaaggaggtcacctaccgtagcctt 3096899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 569
Target Start/End: Complemental strand, 40813775 - 40813740
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctc 569  Q
    |||||||||||||||||||||||||||| |||||||    
T  40813775 tcaagtctcctacggtaggagacctaaaaaggtctc 40813740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 582
Target Start/End: Complemental strand, 41055810 - 41055763
Alignment:
Q  535 caagtctcctacggtaggagacctaaagaggtctcccactgtagcctt 582  Q
    |||||||||||||||||||||||||| |||||| || || ||||||||    
T  41055810 caagtctcctacggtaggagacctaaggaggtcacctaccgtagcctt 41055763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 582
Target Start/End: Original strand, 9113132 - 9113177
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctt 582  Q
    ||||||||||||||||||||   ||||||||||||||||| ||||||||    
T  9113132 tcaagtctcctacggtagga---ctaaagaggtctcccaccgtagcctt 9113177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 5449696 - 5449350
Alignment:
Q  1 catctagtggcggcattaagaacagtttgactgagaagcaggagagagaaagtagcaacgccgtagacagtagaagcgtcggtggtgtagacaccgccgt 100  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  5449696 catctagtggcgacgttaagaacagtttgactgagaagcaggagagagaaagcagcaacgccgtagacagtagaagcgtcggtggtgtagacaccgccat 5449597  T
Q  101 agacagtttttacaatttttgctgatagggaaaatggatcggatgttgtttcaagaatttgaatttctataacaatggtgattattgattgattccattt 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5449596 ggacagtttttacaatttttgctgatagggaaaatggatcggatgttgtttcaagaatttgaatttgtataacaatggtgattattgattgattccattt 5449497  T
Q  201 tcttaccgtttttgcttttcttgtgattgattccagaatttacatcaatttattttcttctactgtaaaaatacaatttttgttgacaaaggtgtggata 300  Q
    |||||  |||| |||||||| | |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  5449496 tcttatagtttctgcttttcctatgattgattccaaaatttacaccaatttattttcttctaccgtaaaaatacaatttttggtgacaaaggtgtggata 5449397  T
Q  301 tttccaaaattaaaatgaacctacagtgtataataagaactctcgac 347  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||    
T  5449396 tttccaaaattaaaatgaacctgcagtgtgtaataagaactctcgac 5449350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 432 - 537
Target Start/End: Complemental strand, 5449233 - 5449127
Alignment:
Q  432 tttctctctcatccaattgcaatgcttttcactttttatcaataaaccgttgaattaattcaataactcttatttatttagcaaccaaacaa-aaaataa 530  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||    
T  5449233 tttctctctcctccaattgcaatgtttttctctttttatcaataaaccgttggattaatccaataactcctatttatttagcaaccaaacaaaaaaataa 5449134  T
Q  531 tagtcaa 537  Q
    |||||||    
T  5449133 tagtcaa 5449127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 22004058 - 22004110
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22004058 tcaagtctcctacggtaggagacctaaagaggtctcccaccgtagcctttgcc 22004110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 22011575 - 22011627
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22011575 tcaagtctcctacggtaggagacctaaagaggtctcccaccgtagcctttgcc 22011627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 27949173 - 27949225
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27949173 tcaagtctcctacggtaggagacctaaagaggtctcccaccgtagcctttgcc 27949225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 417 - 466
Target Start/End: Complemental strand, 5449280 - 5449231
Alignment:
Q  417 tgatctgcatatacgtttctctctcatccaattgcaatgcttttcacttt 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5449280 tgatctgcatatacgtttctctctcatccaattgcaatgcttttctcttt 5449231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 539 - 586
Target Start/End: Original strand, 26959980 - 26960027
Alignment:
Q  539 tctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26959980 tctcctacggtaggagacctaaagaggtctcccaccgtagcctttgcc 26960027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 586
Target Start/End: Original strand, 27657922 - 27657985
Alignment:
Q  523 aaaaataatagtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  27657922 aaaaaaaaaagtcaagtctcctacggtaggagacctaaagaggtctcctaccgtagcgtttgcc 27657985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 529 - 584
Target Start/End: Original strand, 8474935 - 8474990
Alignment:
Q  529 aatagtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttg 584  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  8474935 aatagtccagtctcctacggtaggagacctaaaaaggtcttccaccgtagcctttg 8474990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 522 - 565
Target Start/End: Complemental strand, 47668338 - 47668295
Alignment:
Q  522 aaaaaataatagtcaagtctcctacggtaggagacctaaagagg 565  Q
    |||||| || ||||||||||||||||||||||||||||||||||    
T  47668338 aaaaaaaaaaagtcaagtctcctacggtaggagacctaaagagg 47668295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 586
Target Start/End: Original strand, 51986772 - 51986843
Alignment:
Q  515 accaaacaaaaaataatagtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||| |||||| || |||||||||||||||||||||||||| |||||| ||  | || ||||||||||||    
T  51986772 accaaaaaaaaaaaaaaagtcaagtctcctacggtaggagacccaaagagatcggctaccgtagcctttgcc 51986843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 566
Target Start/End: Complemental strand, 30593745 - 30593713
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggt 566  Q
    |||||||||||||||||||||||||||||||||    
T  30593745 tcaagtctcctacggtaggagacctaaagaggt 30593713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 567
Target Start/End: Original strand, 12009875 - 12009910
Alignment:
Q  532 agtcaagtctcctacggtaggagacctaaagaggtc 567  Q
    |||||||||||||||||||||||| |||||||||||    
T  12009875 agtcaagtctcctacggtaggagatctaaagaggtc 12009910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 582
Target Start/End: Original strand, 21218516 - 21218563
Alignment:
Q  535 caagtctcctacggtaggagacctaaagaggtctcccactgtagcctt 582  Q
    |||||||||||||||||||||||||| |||||| || || ||||||||    
T  21218516 caagtctcctacggtaggagacctaaggaggtcacctaccgtagcctt 21218563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 586
Target Start/End: Complemental strand, 21219710 - 21219663
Alignment:
Q  539 tctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    ||||||||||||||||||||||||||||  || || ||||||||||||    
T  21219710 tctcctacggtaggagacctaaagaggttgcctaccgtagcctttgcc 21219663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 573
Target Start/End: Original strand, 33477613 - 33477650
Alignment:
Q  536 aagtctcctacggtaggagacctaaagaggtctcccac 573  Q
    |||||||||||||||||||||||||| || ||||||||    
T  33477613 aagtctcctacggtaggagacctaaaaagatctcccac 33477650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Original strand, 52288652 - 52288705
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgccc 587  Q
    ||||||| | ||| |||||||||||||||||| |||||||  ||||||||||||    
T  52288652 tcaagtcacttaccgtaggagacctaaagaggcctcccaccctagcctttgccc 52288705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 39111353 - 39111699
Alignment:
Q  1 catctagtggcggcattaagaacagtttgactgagaagcaggagagagaaagtagcaacgccgtagacagtagaagcgtcggtggtgtagacaccgccgt 100  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| | ||||||| |||||| |||||||||||||||||||||||    
T  39111353 catctagtggcggcgttaagaacagtttgactgagaagtaggagagagaaagcagcaacactgtagacaatagaagtgtcggtggtgtagacaccgccgt 39111452  T
Q  101 agacagtttttacaatttttgctgatagggaaaatggatcggatgttgtttcaagaatttgaatttctataacaatggtgattattgattgattccattt 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39111453 agacagtttttacaatttttgctgatagagaaaatggatcggatgttgtttcaagaatttgaatttgtataacaatggtgattattgattgattccattt 39111552  T
Q  201 tcttaccgtttttgcttttcttgtgattgattccagaatttacatcaatttattttcttctactgtaaaaatacaatttttgttgacaaaggtgtggata 300  Q
    ||||||  ||||||| |||  |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  39111553 tcttacaatttttgccttttctgtgattgattccaaaatttgcaccaatttattttcttctactgtaaaaatacaatttttgttgagaaaggtgtgaata 39111652  T
Q  301 tttccaaaattaaaatgaacctacagtgtataataagaactctcgac 347  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  39111653 tttccaaaattaaaatgaacctacagtgtgtaataagaactctcgac 39111699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 417 - 587
Target Start/End: Original strand, 39111769 - 39111939
Alignment:
Q  417 tgatctgcatatacgtttctctctcatccaattgcaatgcttttcactttttatcaataaaccgttgaattaattcaataactcttatttatttagcaac 516  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||||||||||||||    
T  39111769 tgatctgcatatacgtttctctctcctccaattgcaatgcttttctctttttatcaataaaccgttggattaatccaataactcctatttatttagcaac 39111868  T
Q  517 caaacaaaaaataatagtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgccc 587  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||    
T  39111869 caaacaaaaaaaaatagtcaagtcttctacggtaggagacctaaagaagtctcccaccgtagcctttgccc 39111939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 535 - 586
Target Start/End: Complemental strand, 35346351 - 35346300
Alignment:
Q  535 caagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    ||||||||||||||||||||||||||||||||| || || ||||||||||||    
T  35346351 caagtctcctacggtaggagacctaaagaggtcgcctaccgtagcctttgcc 35346300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 586
Target Start/End: Complemental strand, 33017741 - 33017689
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||||||||||||||||||| ||||||||| || || ||||||||||||    
T  33017741 tcaagtctcctacggtaggagacccaaagaggtcgcctaccgtagcctttgcc 33017689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 536 - 586
Target Start/End: Complemental strand, 5826719 - 5826669
Alignment:
Q  536 aagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||||||||||||||| ||||||| |||||| || ||||||||||||    
T  5826719 aagtctcctacggtaggagatctaaagaagtctcctaccgtagcctttgcc 5826669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 582
Target Start/End: Complemental strand, 48401259 - 48401212
Alignment:
Q  535 caagtctcctacggtaggagacctaaagaggtctcccactgtagcctt 582  Q
    |||||||||||||||||||||||||| |||||| || || ||||||||    
T  48401259 caagtctcctacggtaggagacctaaggaggtcacctaccgtagcctt 48401212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 582
Target Start/End: Original strand, 34617591 - 34617637
Alignment:
Q  536 aagtctcctacggtaggagacctaaagaggtctcccactgtagcctt 582  Q
    ||||||||||||||||||||||||| |||||| || || ||||||||    
T  34617591 aagtctcctacggtaggagacctaaggaggtcacctaccgtagcctt 34617637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 573
Target Start/End: Original strand, 52106247 - 52106281
Alignment:
Q  539 tctcctacggtaggagacctaaagaggtctcccac 573  Q
    ||||||||||||||||||||||| |||||||||||    
T  52106247 tctcctacggtaggagacctaaaaaggtctcccac 52106281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 567
Target Start/End: Original strand, 33433721 - 33433754
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtc 567  Q
    |||||||||||||||||||||||| |||||||||    
T  33433721 tcaagtctcctacggtaggagacccaaagaggtc 33433754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 564
Target Start/End: Complemental strand, 39159046 - 39159017
Alignment:
Q  535 caagtctcctacggtaggagacctaaagag 564  Q
    ||||||||||||||||||||||||||||||    
T  39159046 caagtctcctacggtaggagacctaaagag 39159017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 587
Target Start/End: Original strand, 38383355 - 38383407
Alignment:
Q  535 caagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgccc 587  Q
    ||||| |||||||||||||||||||| |||||| || || |||||||| ||||    
T  38383355 caagtttcctacggtaggagacctaaggaggtcacctaccgtagccttggccc 38383407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 49604605 - 49604698
Alignment:
Q  1 catctagtggcggcattaagaacagtttgactgagaagcaggagagagaaagtagcaacgccgtagacagtagaagcgtcggtggtgtagacac 94  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||||| || ||||||||||||||||| ||||    
T  49604605 catctagtgacggcgttaagaacagtttgactaagaagcaggagagagaaagcagcaacaccgtagacggtggaagcgtcggtggtgtaaacac 49604698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 39156823 - 39156770
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgccc 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39156823 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgccc 39156770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 587
Target Start/End: Complemental strand, 40042508 - 40042456
Alignment:
Q  535 caagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgccc 587  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  40042508 caagtctcttacggtaggagacctaaagaggtctcccaccgtagcctttgccc 40042456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 536 - 586
Target Start/End: Original strand, 18628264 - 18628314
Alignment:
Q  536 aagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||||||||    
T  18628264 aagtctcctacggtaggagacctaatgagatctcccaccgtagcctttgcc 18628314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 573
Target Start/End: Original strand, 4483808 - 4483847
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccac 573  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  4483808 tcaagtctcatacggtagaagacctaaagaggtctcccac 4483847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 586
Target Start/End: Original strand, 47125587 - 47125653
Alignment:
Q  520 acaaaaaataatagtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||| || |||||||| ||||||||||| ||||| ||||||||| || ||  |||||||||||    
T  47125587 acaaaaaaaaaaagtcaagtatcctacggtagaagacccaaagaggtcgcctaccatagcctttgcc 47125653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 46908237 - 46908282
Alignment:
Q  537 agtctcctacggtaggagacctaaagaggtctcccactgtagcctt 582  Q
    |||||||||||||||||||||||| |||||| || || ||||||||    
T  46908237 agtctcctacggtaggagacctaaggaggtcacctaccgtagcctt 46908282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 328236 - 328172
Alignment:
Q  522 aaaaaataatagtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  328236 aaaaaaaaaaagttaagtctcctacggtaggagacctaaagaggtctcccaccgtagcctttgcc 328172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 532 - 584
Target Start/End: Original strand, 32839176 - 32839228
Alignment:
Q  532 agtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttg 584  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  32839176 agtcaagtctcctacggtaggagatctaaagaggtctcccaccgtagcctttg 32839228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 26762372 - 26762436
Alignment:
Q  522 aaaaaataatagtcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||| || |||||||||||||||||||||||||| ||||||||| || || ||||||||||||    
T  26762372 aaaaaaaaaaagtcaagtctcctacggtaggagacccaaagaggtcgcctaccgtagcctttgcc 26762436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 536 - 586
Target Start/End: Original strand, 26049740 - 26049790
Alignment:
Q  536 aagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||| |||||| ||||||||||||||||||| || ||||||||||||    
T  26049740 aagtctcccacggtatgagacctaaagaggtctcctaccgtagcctttgcc 26049790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 47161141 - 47161109
Alignment:
Q  20 gaacagtttgactgagaagcaggagagagaaag 52  Q
    |||||||||||||||||||||||||||||||||    
T  47161141 gaacagtttgactgagaagcaggagagagaaag 47161109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 586
Target Start/End: Complemental strand, 2704199 - 2704152
Alignment:
Q  539 tctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    ||||||||| ||||||||||||||||||| || || ||||||||||||    
T  2704199 tctcctacgataggagacctaaagaggtcgcctaccgtagcctttgcc 2704152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 582
Target Start/End: Original strand, 7702586 - 7702633
Alignment:
Q  535 caagtctcctacggtaggagacctaaagaggtctcccactgtagcctt 582  Q
    |||||||||||||||||||||||||| |||||| || || ||||||||    
T  7702586 caagtctcctacggtaggagacctaaggaggtcacctaccgtagcctt 7702633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 48505579 - 48505630
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    ||||||||||||||||| ||||| |||| |||||||| || ||||||||||||    
T  48505579 tcaagtctcctacggtacgagacttaaa-aggtctcctaccgtagcctttgcc 48505630  T

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Target: scaffold0040 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 68305 - 68252
Alignment:
Q  534 tcaagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgccc 587  Q
    |||||||||||||||||||||||||||||||||| || || ||||||| |||||    
T  68305 tcaagtctcctacggtaggagacctaaagaggtcgcctaccgtagcctatgccc 68252  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 539 - 586
Target Start/End: Original strand, 6383753 - 6383800
Alignment:
Q  539 tctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||    
T  6383753 tctcctacggtaggagacctaaagaggcctcctaccgtagcctttgcc 6383800  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 586
Target Start/End: Complemental strand, 16049673 - 16049622
Alignment:
Q  535 caagtctcctacggtaggagacctaaagaggtctcccactgtagcctttgcc 586  Q
    |||||||||||||| |||||||||||||||||  || || ||||||||||||    
T  16049673 caagtctcctacggcaggagacctaaagaggttacctaccgtagcctttgcc 16049622  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 533 - 567
Target Start/End: Complemental strand, 1012855 - 1012821
Alignment:
Q  533 gtcaagtctcctacggtaggagacctaaagaggtc 567  Q
    ||||||||||||||||||||||| |||||||||||    
T  1012855 gtcaagtctcctacggtaggagatctaaagaggtc 1012821  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 584
Target Start/End: Complemental strand, 18923772 - 18923726
Alignment:
Q  538 gtctcctacggtaggagacctaaagaggtctcccactgtagcctttg 584  Q
    |||||||||||||||||| |||||||||||||| ||  |||||||||    
T  18923772 gtctcctacggtaggagatctaaagaggtctcctaccatagcctttg 18923726  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 1366299 - 1366347
Alignment:
Q  535 caagtctcctacggtaggagacctaaagaggtctcccactgtagccttt 583  Q
    |||||||| |||||||||||| |||||||| |||||||| |||||||||    
T  1366299 caagtctcttacggtaggagatctaaagagatctcccaccgtagccttt 1366347  T

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