View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_81 (Length: 268)
Name: NF21120_low_81
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 10497931 - 10497693
Alignment:
| Q |
11 |
gcagcacagtatgcacaatatcctcctgcttgcttttcagtatttatatccattggaactggtttttggaatactaaggaaagcaatgaacttcctgctg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10497931 |
gcagcacagtatgcacaatatcctcctgcttgcttttcagtatgtatatccattggaactggtttttggaatactaaggaaagcaatgaacttcctgctg |
10497832 |
T |
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| Q |
111 |
agattaaagaagaagcagctaagatagtactaagatcagcaaatctgctagagagagctggtaatcatcgtagagagggattgtggaaatcggttatgga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| |
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| T |
10497831 |
agattaaagaagaagcagctaagatagtactaagatcagcaaatctgctagagagagctagtaatcatcgtagagggggattgtggaaaccggttgtgga |
10497732 |
T |
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| Q |
211 |
tgcagtgaggaatcgtctgtccaaatggaataatagacg |
249 |
Q |
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| T |
10497731 |
tgcagtgaggaatcgtctgtccaaatggaataatagacg |
10497693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 10502960 - 10502722
Alignment:
| Q |
11 |
gcagcacagtatgcacaatatcctcctgcttgcttttcagtatttatatccattggaactggtttttggaatactaaggaaagcaatgaacttcctgctg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10502960 |
gcagcacagtatgcacaatatcctcctgcttgcttttcagtatgtatatccattggaactggtttttggaatactaaggaaagcaatgaacttcctgctg |
10502861 |
T |
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| Q |
111 |
agattaaagaagaagcagctaagatagtactaagatcagcaaatctgctagagagagctggtaatcatcgtagagagggattgtggaaatcggttatgga |
210 |
Q |
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| T |
10502860 |
agattaaagaagaagcagctaagatagtactaagatcagcaaatctgctagagagagctagtaatcatcgtagagggggattgtggaaaccggttgtgga |
10502761 |
T |
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| Q |
211 |
tgcagtgaggaatcgtctgtccaaatggaataatagacg |
249 |
Q |
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| T |
10502760 |
tgcagtgaggaatcgtctgtccaaatggaataatagacg |
10502722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 13336233 - 13335995
Alignment:
| Q |
11 |
gcagcacagtatgcacaatatcctcctgcttgcttttcagtatttatatccattggaactggtttttggaatactaaggaaagcaatgaacttcctgctg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13336233 |
gcagcacagtatgcacaatatcctcctgcttgcttttcagtatgtatatccattggaactggtttttggaatactaaggaaagcaatgaacttccttctg |
13336134 |
T |
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| Q |
111 |
agattaaagaagaagcagctaagatagtactaagatcagcaaatctgctagagagagctggtaatcatcgtagagagggattgtggaaatcggttatgga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
13336133 |
agattaaagaagaagcagctaagatagtactaagatcagctcatctgctagagagagctggtaatcgtcgtagagagggattgtggaaaccggttgtgga |
13336034 |
T |
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| Q |
211 |
tgcagtgaggaatcgtctgtccaaatggaataatagacg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
13336033 |
tgcagtgaggaatcgtctgtccaaatggaataatagacg |
13335995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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