View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_85 (Length: 261)
Name: NF21120_low_85
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_85 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 6558263 - 6558521
Alignment:
| Q |
1 |
ttttggaagggttatggagaaagagagaaaacaagagaaaggtataaggaaataggaggataagggaaatgaaagaagttttggactatatattgtgtgt |
100 |
Q |
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| T |
6558263 |
ttttggaagggttatggagaaaaagagaaaacaagagaaaggtgtaaggaaataggaggataagggaaatgaaagaagttttggactatatattgtgtgt |
6558362 |
T |
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| Q |
101 |
gaagtttatgattttgctttgaattttaattgagtgg----nnnnnnnncttctttctataa---attagcaatgcttcatgttgttttcattgccatta |
193 |
Q |
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| T |
6558363 |
gaagtttatgatttttctttgaattttaattgagtggttttttttttcttttctttctataaaccattagcaatgcttcaagttgttttcatagccatta |
6558462 |
T |
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| Q |
194 |
atagacttaaatattgtgtatcatgattcatgatatcttaccctttgtgatgttctctg |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6558463 |
atagacttaaatattgtgtatcatgattcatgatatcttaccctttgtgatgttctctg |
6558521 |
T |
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