View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_88 (Length: 256)
Name: NF21120_low_88
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 47248185 - 47247946
Alignment:
| Q |
1 |
cgaatataaaggactttgtgtggtgggataggtggtgatattaccaaattttgggggttatgcggcttttgacaatcaattactgatggccacatgctgc |
100 |
Q |
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| T |
47248185 |
cgaatataaaggactttttgtggtgggataggtggtgatattatcaaattttgggggttatgcggcttttgacaatcaattactgatggccacatgctgc |
47248086 |
T |
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| Q |
101 |
tggactggatcttggtatatatagtaatccaatcactgatgctgactgcttgttaacttttgatgataatccgcttgtactactaatggctatgcctatt |
200 |
Q |
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| T |
47248085 |
tggactggatcttggtatatatagtaatccaatcactgatgctgactgcttgttaacttttgatgataatccgcttgtactactaatggctatgcctatt |
47247986 |
T |
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| Q |
201 |
tcactgtgttcaagttgtcactttttaatacagcctatgctctg |
244 |
Q |
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| T |
47247985 |
tcactgtgttcaagttgtcacttt----tacagcctatgctctg |
47247946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 47241607 - 47241571
Alignment:
| Q |
205 |
tgtgttcaagttgtcactttttaatacagcctatgct |
241 |
Q |
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| T |
47241607 |
tgtgttcaagttgtcacttgttaatacaacctatgct |
47241571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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