View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21120_low_92 (Length: 245)
Name: NF21120_low_92
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21120_low_92 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 163544 - 163316
Alignment:
| Q |
17 |
caactccaccatatataggcaaataattggtgctcttcaacattgaaatcccaaccttcctgacttatcagtcaacatcaacaagctttctcaattcatg |
116 |
Q |
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| T |
163544 |
caactccaccacatataggcaaataattggtgctcttcaacatttaaatcccaaccttcctgacttatcagtcaacatcaacaagctttctcaattcatg |
163445 |
T |
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| Q |
117 |
cacaaacctattaccattcatcttcaacacttaaaacgcctttttctattttaagcataccatttactttttgatcatgctaaacgaccttgttatctca |
216 |
Q |
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| T |
163444 |
cacaaacctattaccattcatcttcaacacttaaaacgcctttttctattttaagcataccatttactttttgatcatgctaaacgaccttgttatctca |
163345 |
T |
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| Q |
217 |
acttattgcaatatatctcaacatcagcc |
245 |
Q |
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| T |
163344 |
acttattgctatatatctcaacatcagcc |
163316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 40113180 - 40113122
Alignment:
| Q |
93 |
atcaacaagctttctcaattcatgcacaaacctattaccattcatcttcaacacttaaa |
151 |
Q |
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| T |
40113180 |
atcaacaagctctcccaattcatgcataaacctatatcccttcatcttcaacatttaaa |
40113122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 654306 - 654274
Alignment:
| Q |
92 |
catcaacaagctttctcaattcatgcacaaacc |
124 |
Q |
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| T |
654306 |
catcaacaagctttctcaattcatgtacaaacc |
654274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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