View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21120_low_98 (Length: 237)

Name: NF21120_low_98
Description: NF21120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21120_low_98
NF21120_low_98
[»] chr4 (13 HSPs)
chr4 (7-222)||(52249386-52249601)
chr4 (130-222)||(2588351-2588444)
chr4 (130-222)||(16497570-16497663)
chr4 (130-222)||(16497761-16497854)
chr4 (35-107)||(2588507-2588579)
chr4 (130-222)||(4289939-4290032)
chr4 (130-222)||(5650601-5650693)
chr4 (32-107)||(16497926-16498001)
chr4 (35-108)||(5650774-5650847)
chr4 (130-222)||(39598969-39599062)
chr4 (49-137)||(39599135-39599223)
chr4 (32-84)||(28075448-28075500)
chr4 (32-84)||(11156548-11156600)
[»] chr8 (16 HSPs)
chr8 (130-222)||(3277646-3277739)
chr8 (130-222)||(20900922-20901015)
chr8 (34-108)||(34784534-34784608)
chr8 (130-222)||(1548293-1548386)
chr8 (130-222)||(34784359-34784452)
chr8 (37-108)||(3117707-3117778)
chr8 (52-133)||(29168536-29168617)
chr8 (32-108)||(20900773-20900849)
chr8 (35-108)||(1548139-1548212)
chr8 (130-222)||(3117860-3117952)
chr8 (150-222)||(23033552-23033624)
chr8 (33-106)||(3277518-3277591)
chr8 (33-108)||(23033396-23033471)
chr8 (135-216)||(29168374-29168455)
chr8 (130-208)||(3376202-3376281)
chr8 (32-69)||(15657346-15657383)
[»] chr7 (8 HSPs)
chr7 (33-107)||(12859261-12859335)
chr7 (130-222)||(32775320-32775413)
chr7 (33-108)||(36167746-36167821)
chr7 (130-222)||(12859086-12859179)
chr7 (130-222)||(19886721-19886814)
chr7 (32-108)||(19886571-19886647)
chr7 (130-222)||(36167589-36167682)
chr7 (32-108)||(32775170-32775246)
[»] chr5 (8 HSPs)
chr5 (130-222)||(7992248-7992341)
chr5 (33-108)||(7992423-7992498)
chr5 (32-108)||(32325826-32325902)
chr5 (33-108)||(12904995-12905070)
chr5 (135-222)||(10916963-10917051)
chr5 (130-209)||(28276873-28276953)
chr5 (32-84)||(34641930-34641982)
chr5 (32-69)||(28827502-28827539)
[»] chr3 (9 HSPs)
chr3 (130-222)||(32130312-32130405)
chr3 (33-137)||(9454604-9454708)
chr3 (33-108)||(53208700-53208775)
chr3 (32-106)||(7322854-7322928)
chr3 (130-222)||(53208546-53208639)
chr3 (37-108)||(32130160-32130231)
chr3 (130-222)||(7322994-7323085)
chr3 (130-222)||(9454772-9454865)
chr3 (32-69)||(1915483-1915520)
[»] chr2 (10 HSPs)
chr2 (130-222)||(25438445-25438538)
chr2 (35-108)||(44673172-44673245)
chr2 (125-222)||(44673312-44673410)
chr2 (33-105)||(25438287-25438359)
chr2 (130-221)||(36536243-36536335)
chr2 (33-84)||(21006375-21006426)
chr2 (32-84)||(6536544-6536596)
chr2 (33-84)||(24132211-24132262)
chr2 (37-86)||(37154923-37154972)
chr2 (32-69)||(39574644-39574681)
[»] chr6 (2 HSPs)
chr6 (33-108)||(13425691-13425766)
chr6 (148-222)||(13425559-13425633)
[»] chr1 (4 HSPs)
chr1 (130-211)||(50204657-50204739)
chr1 (32-84)||(23963006-23963058)
chr1 (79-137)||(47523697-47523755)
chr1 (153-211)||(47523847-47523905)
[»] scaffold0003 (1 HSPs)
scaffold0003 (32-76)||(247184-247228)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 52249601 - 52249386
Alignment:
Q  7 ggagcaatgtatgcaggagttccatccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  52249601 ggagcaatgtatgcaggagttccatccaaggtagtcaggaatgagtcccagtacgtaggatcgcacgatcttacgtgccacagcacctctaccgtgcttc 52249502  T
Q  107 gacttcactctggttcggatttactctgttttattgcttggttctctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctcta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  52249501 gacttcactctggttcggatttactctgttttattgcttggttctctgttttttctctagtatctctgtttttatgtttggttcctctgttttccctcta 52249402  T
Q  207 ttttccctatatattt 222  Q
    ||||||||||||||||    
T  52249401 ttttccctatatattt 52249386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 2588444 - 2588351
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | ||| |||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  2588444 ctctgttttattgcttggttcctctgtttttcctctaatatatctgtttttatgcttggttcccctgttttccctctattttccctatatattt 2588351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 16497663 - 16497570
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||    
T  16497663 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggctcccctgttttccctctattttccctatatattt 16497570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 16497854 - 16497761
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||    
T  16497854 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggctcccctgttttccctctattttccctatatattt 16497761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 2588579 - 2588507
Alignment:
Q  35 aggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcg 107  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  2588579 aggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtacttcg 2588507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 4290032 - 4289939
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    |||| |||| ||||||||||| ||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||| |||| |||||    
T  4290032 ctctattttgttgcttggttcctctgtttttcctctattatctctgtttttatgcttggttcctctgttttccctctattttctctatctattt 4289939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 5650693 - 5650601
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| |||||||||| || | |||||||||||| ||| |||||||||  ||||||||||||||||||||||||||||    
T  5650693 ctctgttttattgcttggttcctctgtttttcttctaatatctctgtttt-atgcttggttcctttgttttccctctattttccctatatattt 5650601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 16498001 - 16497926
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcg 107  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| || |||||| |||||||| |||||||||||    
T  16498001 ccaaggtagtcaagaacgagtcccagcacgtaggatcgcacgatcgtatgtgccacagcacctcgaccgtgcttcg 16497926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 5650847 - 5650774
Alignment:
Q  35 aggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    ||||||||||||| |||||| ||||||||||||||||| |||| |||||||| |||||||| ||||||||||||    
T  5650847 aggtagtcaggaacgagtccaagcacgtaggatcgcacaatctcacgtgccacagcacctcgaccgtgcttcga 5650774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 39599062 - 39598969
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    |||| |||| ||||||||||| ||||||||||||| | |||||||| ||||||| |||||||||| ||||||||||||||||| |||| |||||    
T  39599062 ctctattttgttgcttggttcctctgtttttcctctattatctctgcttttatgcttggttcctctgttttccctctattttctctatctattt 39598969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 39599223 - 39599135
Alignment:
Q  49 gagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcgacttcactctggttcggatttactctgttt 137  Q
    |||||||||| ||||||||| ||||||||||||| ||| | |||||| |  |||||||||||| |||||||||||| ||| ||||||||    
T  39599223 gagtcccagctcgtaggatcacacgatcttacgttccacaacacctcaattgtgcttcgactttactctggttcggttttgctctgttt 39599135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 28075448 - 28075500
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgc 84  Q
    ||||||||| |||||  ||||||||||  ||||||||||||||||||||||||    
T  28075448 ccaaggtagccaggatcgagtcccagcttgtaggatcgcacgatcttacgtgc 28075500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 11156548 - 11156600
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgc 84  Q
    ||||||||| |||||  |||| |||||||||||||||||| ||||||| ||||    
T  11156548 ccaaggtagccaggatcgagttccagcacgtaggatcgcatgatcttatgtgc 11156600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 3277646 - 3277739
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  3277646 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgtttggttcccctgttttccctctattttccctatatattt 3277739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 20900922 - 20901015
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||| |||||||    
T  20900922 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgtttggttcccctgttttccctctattttccctgtatattt 20901015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 34784608 - 34784534
Alignment:
Q  34 aaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  34784608 aaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcga 34784534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 1548293 - 1548386
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||    
T  1548293 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggttcccctgttttccctctattttccctatacattt 1548386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 34784452 - 34784359
Alignment:
Q  130 ctctgttttattgcttggtt-ctctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    |||||||||||||||||||| |||||||||||||| | |||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||    
T  34784452 ctctgttttattgcttggtttctctgtttttcctctaatatctctgtttttatgcttggttcccctgttttccctatattttccctatatattt 34784359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 3117707 - 3117778
Alignment:
Q  37 gtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||    
T  3117707 gtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagtacctcgaccgtgcttcga 3117778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 29168617 - 29168536
Alignment:
Q  52 tcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcgacttcactctggttcggatttactct 133  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||    
T  29168617 tcccagctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgacttcactctggttcggttttgctct 29168536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 20900773 - 20900849
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||    
T  20900773 ccaaggtagtcaggaacaagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgactgtgcttcga 20900849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 1548139 - 1548212
Alignment:
Q  35 aggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||    
T  1548139 aggtagtcaggaacgagtcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaacgtgcttcga 1548212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 3117860 - 3117952
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||| ||| |||||||| | | ||||||||||||||||||||||||||    
T  3117860 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttt-atgcttggttcccctgctttccctctattttccctatatattt 3117952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 23033552 - 23033624
Alignment:
Q  150 ctctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    |||||||||||||| | |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  23033552 ctctgtttttcctctaatatctctgtttttatgcttggttcccctgttttccctctattttccctatatattt 23033624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 3277518 - 3277591
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttc 106  Q
    ||||||||||||||| || |||||||| |||||||||||||||||||||||||| | |||||| ||||||||||    
T  3277518 caaggtagtcaggaacgaatcccagcatgtaggatcgcacgatcttacgtgccacaacacctcgaccgtgcttc 3277591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 23033396 - 23033471
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    ||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||| | |||||| ||||||||||||    
T  23033396 caaggtactcaggaacgagtcccagcatgtaggatcgcatgatcttacgtgccacaacacctcgaccgtgcttcga 23033471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 29168455 - 29168374
Alignment:
Q  135 ttttattgcttggtt-ctctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctat 216  Q
    |||| |||||||||| |||||||||||||| | |||||||||||||||| |||||||||| | |||||| |||||||| ||||    
T  29168455 ttttgttgcttggtttctctgtttttcctctattatctctgtttttatgcttggttcctctg-tttccccctattttctctat 29168374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 3376281 - 3376202
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctatt 208  Q
    |||| |||| || |||||||| ||||||||||||  | |||||||||||||||| |||||||||| ||||| ||||||||    
T  3376281 ctctattttgttacttggttcctctgtttttcctttattatctctgtttttatgcttggttcctctgtttttcctctatt 3376202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 15657346 - 15657383
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcg 69  Q
    |||||||||||||||| |||||||||||||||||||||    
T  15657346 ccaaggtagtcaggaacgagtcccagcacgtaggatcg 15657383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 12859335 - 12859261
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  12859335 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcg 12859261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 32775320 - 32775413
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  32775320 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgtttggctcccctgttttccctctattttccctatatattt 32775413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 36167821 - 36167746
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  36167821 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcga 36167746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 12859179 - 12859086
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | ||| |||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  12859179 ctctgttttattgcttggttcctctgtttttcctctaatatatctgtttttatgcttggttcccctgttttccctctattttccctatatattt 12859086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 19886721 - 19886814
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||    
T  19886721 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgattggctcccctgttttccctctattttccctatatattt 19886814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 19886571 - 19886647
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  19886571 ccaaggtagtcaggaacgagtcccagcacgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcga 19886647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 36167682 - 36167589
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| ||| | ||||| ||||||||||||||||||||||    
T  36167682 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggctcccctgtttttcctctattttccctatatattt 36167589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 32775170 - 32775246
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    |||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||| ||||||||||||    
T  32775170 ccaaggtagtcaggaacgagtcccagcatgtaggatcacacgaccttacgtgccacagcacctcgaccgtgcttcga 32775246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 7992341 - 7992248
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  7992341 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggttcccctgttttccctctattttccctatatattt 7992248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 7992498 - 7992423
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  7992498 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcga 7992423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 32325902 - 32325826
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||    
T  32325902 ccaaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcgtacgtgccacagcacctcgaccgtgcttcga 32325826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 12905070 - 12904995
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | ||| || ||| ||||||||    
T  12905070 caaggtagtcaggaacgagttccagcacgtaggatcgcacgatcttacgtgccacaacacatcgaccatgcttcga 12904995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 10917051 - 10916963
Alignment:
Q  135 ttttattgcttggttct-ctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    |||| |||||||||| | |||||||||||| | |||||||| |||||||||||||||||  ||||| ||||||||||| ||||||||||    
T  10917051 ttttgttgcttggtttttctgtttttcctctattatctctgattttatgtttggttcctatgtttttcctctattttctctatatattt 10916963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 28276873 - 28276953
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattt 209  Q
    |||| |||| ||||||||||| ||||||||||||| | |||||||||||| |||||||||||||  ||||| |||||||||    
T  28276873 ctctattttgttgcttggttcctctgtttttcctctattatctctgttttcatgtttggttcctatgtttttcctctattt 28276953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 34641982 - 34641930
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgc 84  Q
    ||||||||| |||||  ||||||||||| ||||||||||||||||||||||||    
T  34641982 ccaaggtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 34641930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 28827502 - 28827539
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcg 69  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  28827502 ccaaggtagacaggaacgagtcccagcacgtaggatcg 28827539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 32130312 - 32130405
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  32130312 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggttcctttgttttccctctattttccctatatattt 32130405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 9454604 - 9454708
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcgacttcactctggttcggatttactc 132  Q
    ||||||||||| ||| || |||||||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||| ||| |||    
T  9454604 caaggtagtcaagaacgattcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgctttgactttactctggttcggttttgctc 9454703  T
Q  133 tgttt 137  Q
    |||||    
T  9454704 tgttt 9454708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 53208775 - 53208700
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||    
T  53208775 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgtttcga 53208700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 7322854 - 7322928
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttc 106  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  7322854 ccaaggtagccaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttc 7322928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 53208639 - 53208546
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| |  ||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||    
T  53208639 ctctgttttattgcttggttcctctgtttttcctctaacatctctgtttttatgcttggctcccctgttttccctctattttccctatatattt 53208546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 32130160 - 32130231
Alignment:
Q  37 gtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  32130160 gtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcga 32130231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 7322994 - 7323085
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| |||   ||||||||||||||||||||||||||||    
T  7322994 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggctccc--gttttccctctattttccctatatattt 7323085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 9454772 - 9454865
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    |||| |||| ||||||||||| ||||||||||||||| |||| |  |||||||| |||||||||| |||||||||| |||||||||||||||||    
T  9454772 ctctattttgttgcttggttcctctgtttttcctccactatccccatttttatgcttggttcctctgttttccctcaattttccctatatattt 9454865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 1915483 - 1915520
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcg 69  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  1915483 ccaaggtagacaggaacgagtcccagcacgtaggatcg 1915520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 25438445 - 25438538
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  25438445 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgtttggctcccctgttttccctctattttccctatatattt 25438538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 44673172 - 44673245
Alignment:
Q  35 aggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  44673172 aggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcga 44673245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 44673312 - 44673410
Alignment:
Q  125 atttactctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    |||| ||||||||||||||||||||| | ||||||||||| | |||||||||||||||| ||||||||   ||||||||||||||||||||||||||||    
T  44673312 atttcctctgttttattgcttggttcctttgtttttcctctaatatctctgtttttatgcttggttcccttgttttccctctattttccctatatattt 44673410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 25438287 - 25438359
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgctt 105  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  25438287 caaggtagtcaggaacgagtcccagcacgtaggatcgcatgatcttacgtgccacagcacctcgaccgtgctt 25438359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 36536335 - 36536243
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatt 221  Q
    |||| |||| ||||||||||| ||||||||||||| | |||||||||||||||| |||||||||| ||||| ||||||||||| |||| ||||    
T  36536335 ctctattttgttgcttggttcctctgtttttcctctattatctctgtttttatgcttggttcctctgtttttcctctattttctctatctatt 36536243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 21006426 - 21006375
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgc 84  Q
    |||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  21006426 caaggtagccaggatcgagtcccagcacgtaggatcgcacgatcttacgtgc 21006375  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 6536544 - 6536596
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgc 84  Q
    ||||||||| |||||  ||||||||||| ||||||||||||||||||||||||    
T  6536544 ccaaggtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 6536596  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 24132211 - 24132262
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgc 84  Q
    |||||||| |||||  || |||||||||||||||||||||||||||||||||    
T  24132211 caaggtagccaggatcgaatcccagcacgtaggatcgcacgatcttacgtgc 24132262  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 37154972 - 37154923
Alignment:
Q  37 gtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgcca 86  Q
    ||||||| ||| ||||||| || |||||||||||||||||||||||||||    
T  37154972 gtagtcaagaacgagtcccggctcgtaggatcgcacgatcttacgtgcca 37154923  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 39574681 - 39574644
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcg 69  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  39574681 ccaaggtagacaggaacgagtcccagcacgtaggatcg 39574644  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 13425766 - 13425691
Alignment:
Q  33 caaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccaaagcacctctaccgtgcttcga 108  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  13425766 caaggtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttatgtgccacagcacctcgaccgtgcttcga 13425691  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 13425633 - 13425559
Alignment:
Q  148 ttctctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatattt 222  Q
    |||||||||||||||| | |||||||||||||||| ||| || | | ||||||||||||||||||||||||||||    
T  13425633 ttctctgtttttcctctaatatctctgtttttatgcttgttttccctgttttccctctattttccctatatattt 13425559  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 50204657 - 50204739
Alignment:
Q  130 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttc 211  Q
    ||||||||| ||| ||| ||| ||||||||||||| | | ||||||||||| || |||||||||| ||||| |||||||||||    
T  50204657 ctctgtttttttgtttgtttcctctgtttttcctctactttctctgtttttttgcttggttcctctgtttttcctctattttc 50204739  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 23963058 - 23963006
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgc 84  Q
    ||||||||| |||||  | ||||||||||||||||||||| ||||||||||||    
T  23963058 ccaaggtagccaggatcgggtcccagcacgtaggatcgcatgatcttacgtgc 23963006  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 47523697 - 47523755
Alignment:
Q  79 acgtgccaaagcacctctaccgtgcttcgacttcactctggttcggatttactctgttt 137  Q
    |||||||| |||||||| || |||||||||||| ||| |||||||| ||| ||||||||    
T  47523697 acgtgccacagcacctcgactgtgcttcgactttactatggttcggttttgctctgttt 47523755  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 47523847 - 47523905
Alignment:
Q  153 tgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttc 211  Q
    ||||||||||| | | | |||||||||||| |||||||||| ||||||| |||||||||    
T  47523847 tgtttttcctctattgtgtctgtttttatgcttggttcctctgttttccgtctattttc 47523905  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 247228 - 247184
Alignment:
Q  32 ccaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatc 76  Q
    ||||||||||||||||  ||||||||||||||||| || ||||||    
T  247228 ccaaggtagtcaggaaccagtcccagcacgtaggaacggacgatc 247184  T

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