View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21121_low_4 (Length: 287)
Name: NF21121_low_4
Description: NF21121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21121_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 27434875 - 27435149
Alignment:
| Q |
1 |
caaaataaaatgacatacattcatatcatgaagtgataaatcaac-ttatatgcaatgcaacaagtacatgagggtacctttattaagttattatccaac |
99 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
27434875 |
caaaataaaatgacatacattcatatcatgacgtgataaatcaaccttatatgcaatgcaacaagtacatgaggatacccttattaagttattatccaac |
27434974 |
T |
|
| Q |
100 |
aatggaactactgtttcgacaaactatagctgcagaaatgttcttttgttacactaaattggttataggagggttacataaaatggaatccacgtgctgg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27434975 |
aatggaactactgtttcgacaaactatagctgcagaaatgttcttttgatacactaaattggttataggagggttacataaaatggaatccacgtgctgc |
27435074 |
T |
|
| Q |
200 |
catgagttatgaggataatacaagatcaatagactcgtacatttagtcctgctttcaaaaacaattcatttattc |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27435075 |
catgagttatgaggataatacaagatcaatagactcgtacatttagtcctgctttcaaaaacaattcatttattc |
27435149 |
T |
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