View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21122_high_1 (Length: 714)

Name: NF21122_high_1
Description: NF21122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21122_high_1
NF21122_high_1
[»] chr5 (1 HSPs)
chr5 (1-699)||(229161-229842)


Alignment Details
Target: chr5 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 1 - 699
Target Start/End: Complemental strand, 229842 - 229161
Alignment:
Q  1 cccctctctctctccctccggtaccgatgatgtaagttcacttctctctacttgatcactatttattattagcttttaatattggacttaacacattcct 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  229842 cccctctatctctccctccggtaccgatgatgtaagttcacttctctctacttgatcactatttattattagcttttaatattggacttaacatat-cct 229744  T
Q  101 tacaaaatcaacgtttaccatgtcatattaatattttttatattagatctaactcattatttataaatcggtatataacatgatgcgatgcgtgcatctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229743 tacaaaatcaacgtttaccatgtcatattaatattttttatattagatctaactcattatttataaatcggtatataacatgatgcgatgcgtgcatctc 229644  T
Q  201 tttgtaaaggtcttggtattttcaatactaataaggttgatccccatatcatacacaaccctttagtttgactcatatcaaagctttatttcgagatcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229643 tttgtaaaggtcttggtattttcaatactaataaggttgatccccatatcatacacaaccctttagtttgactcatatcaaagctttatttcgagatcaa 229544  T
Q  301 atatttcggttcgtaaatgtatatgttgcctttcctaattaaaaaacatgtttatttataaactaagcttccttttcttctactttatctatcattccac 400  Q
    ||||||||||||||||||             |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  229543 atatttcggttcgtaaat-------------ttcctaattaaaaaacatgtttatgtataaactaagcttccttttcttctactttatctatcattccac 229457  T
Q  401 tattttctagccaaattttgtgtgtgcacatcgttttgatgcaaacatagtaaattgttagcctaattaattttgtgggtatattgcattgcagagtggg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229456 tattttctagccaaattttgtgtgtgcacatcgttttgatgcaaacatagtaaattgttagcctaattaattttgtgggtatattgcattgcagagtggg 229357  T
Q  501 gcagagaagttgtggtcacataagatggttggattagtatttggatgtgctttcctgtccttgctgttctagatcgatacctctgtcttctcttcagaac 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229356 gcagagaagttgtggtcacataagatggttggattagtatttggatgtgctttcctgtccttgctgttctagatcgatacctctgtcttctcttcagaac 229257  T
Q  601 tcagattgttatttttacctctatatattattattattttctcgatgtgatatgggagtttattactacatacattgtttgcattcttgagacattcat 699  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229256 tcagattgttatttttacctctatatattat---tattttctcgatgtgatatgggagtttattactacatacattgtttgcattcttgagacattcat 229161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University