View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21122_high_3 (Length: 342)
Name: NF21122_high_3
Description: NF21122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21122_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 41966738 - 41966396
Alignment:
| Q |
1 |
ctgcatgttcaaaaggcttctcatcttgatacacatgggtgtgatataatatgatattaggatttacatcaaagtcggtagtaagagaatgatcttcttt |
100 |
Q |
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| T |
41966738 |
ctgcatgttgaaaaggcttctcatcttgatgcacatgggtgtgatataatatgatattaggatttacatcaaagtcggtagtaaaagaatgatcttcttt |
41966639 |
T |
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| Q |
101 |
tccttcacctaatgcttttggaacttgaataaggtttt-aattgcttcaggcataggttgttcattcatcttattcttccaatagtctcctaaatctttt |
199 |
Q |
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| T |
41966638 |
tccttcatctaatgcttttggaacttgaataaggtttttaattgcttcaggcataggttgttcattcatcttattcttccaatagtctcctaaatctttt |
41966539 |
T |
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| Q |
200 |
cttgcatagctcaggttagcaacctatataataatttcaacagagataaagttaatagagttggtgtatatttagtttcacttttggagacgacaaaatt |
299 |
Q |
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| T |
41966538 |
cttgcatagctcaggttagcaacctatataataatttcaacagagataaagttaatagagttggtgtatatttagtttcacttttagagacgacaaaatt |
41966439 |
T |
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| Q |
300 |
gatgtagaattgattttgatatatttaaatatgtttgcatata |
342 |
Q |
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| T |
41966438 |
gatgtagaattaattttgatatatttaaatatgtttgcgtata |
41966396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 1228099 - 1227849
Alignment:
| Q |
1 |
ctgcatgttcaaaaggcttctcatcttgatacacatgggtgtgatataatatgatattaggatttacatcaaagtcggtagtaagagaatgatcttcttt |
100 |
Q |
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| T |
1228099 |
ctgcatgttcaaaaggcttctcatcttgatgcacatgggtgtgatataatatgatattaggatttacatcaaagtcggtagtaaaagaatgatcttcttt |
1228000 |
T |
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| Q |
101 |
tccttcacctaatgcttttggaacttgaat-aaggttttaattgcttcaggcataggttgttcattcatcttattcttccaatagtctcctaaatctttt |
199 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||| |
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| T |
1227999 |
tccttcacctaatgcttttggaacttgaataaagtttttaattgcttcaggcataggttgcttattcatcttattcttccaaaggtctcctagatctttt |
1227900 |
T |
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| Q |
200 |
cttgcatagctcaggttagcaacctatataataatttcaacagagataaagttaa |
254 |
Q |
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| T |
1227899 |
cttgcatagctcatgttagcaacctat----tcatttcaacagagataaagttaa |
1227849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 54435263 - 54435306
Alignment:
| Q |
33 |
acatgggtgtgatataatatgatattaggatttacatcaaagtc |
76 |
Q |
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| T |
54435263 |
acatgggtgtgatataatatgacattaggctttacatcaaagtc |
54435306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 1227832 - 1227794
Alignment:
| Q |
296 |
aattgatgtagaattgattttgatatatttaaatatgtt |
334 |
Q |
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| T |
1227832 |
aattgatgtaaaattgattttgatatatttaaatgtgtt |
1227794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 26235689 - 26235756
Alignment:
| Q |
140 |
attgcttcaggcataggttgttcattcatcttattcttccaatagtctcctaaatcttttcttgcata |
207 |
Q |
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| T |
26235689 |
attgcttcaggcataggttggtcattcatcatattcttccaataacctcccaagtcttttcttgcata |
26235756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 26235599 - 26235642
Alignment:
| Q |
33 |
acatgggtgtgatataatatgatattaggatttacatcaaagtc |
76 |
Q |
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||||| |||||||||||||||| |||||| |||||||||||||| |
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| T |
26235599 |
acatgtgtgtgatataatatgacattaggctttacatcaaagtc |
26235642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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