View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21122_low_2 (Length: 578)
Name: NF21122_low_2
Description: NF21122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21122_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 573
Target Start/End: Original strand, 49927564 - 49928129
Alignment:
| Q |
20 |
ggttctatatttgtagcctaatcatatgactttaggtgttagttgcaacaaatataaggggcagtatagagtggccacaacaacatttagttcaaatatt |
119 |
Q |
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| T |
49927564 |
ggttctatatttgcagcctaatcatatgactttaggtgttagttgcaacaaatataaggggcagtatagagtggccaaaacaacatttagttcaaatatc |
49927663 |
T |
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| Q |
120 |
acctaatatctaaatatataaaagaaggtttttagttgaattaaatccagtt------------tnnnnnnnntatatttaatagcacgtggatgagatg |
207 |
Q |
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| T |
49927664 |
acctaatatctaaatatataaaagaaggtttttagttgaattaaatccagttaaaaaaaaaaaatcttaaaaaaaaattcaatagcacgtggatgagatg |
49927763 |
T |
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| Q |
208 |
gtttgagcttctttcaacttaactagaggtcttatgttcggattcagttaataaaatgcaatagtattatgagagagagagttttatcgtttattacggc |
307 |
Q |
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| T |
49927764 |
gtttgaacttctttcaacttaactagaggtcttatgttcggattcagttattagaatgcaacagtattat--gagagagagttttatcgtttattacggc |
49927861 |
T |
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| Q |
308 |
tcgatgaaatagtttatctagctagttgtaaacaaaatatctaatttacacnnnnnnnntattaa---tattaaaaggccaaatgcaccctatctctaaa |
404 |
Q |
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| T |
49927862 |
tcgatgaaataatttatctagctagttgtaaacaaaatatctaatttacacaaaaaaaaaaaaaaaattaataaaaggccaaatgcaccctatctctaaa |
49927961 |
T |
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| Q |
405 |
ttgctatccttaacaaataatgccatttggagagattaacgttaacctctccaaatatctctctaatnnnnnnnncttttctgttcctaccaacaactga |
504 |
Q |
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| T |
49927962 |
ttgctatccttaacaaataatgccatttggagagattaacgttaacctctccaaatatctctctaat-aaaaaaacttttctgttcctaccaacaactga |
49928060 |
T |
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| Q |
505 |
tcaagtatcaaaaatctcctccgcaaaggttgttggttttttcctaaccgctaaaccccctttgcttct |
573 |
Q |
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| T |
49928061 |
tcaagtatcaaaaatctcctccgcaaaggttgttggttttttcctaaccgctaaaccccctttgtttct |
49928129 |
T |
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