View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21122_low_3 (Length: 577)

Name: NF21122_low_3
Description: NF21122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21122_low_3
NF21122_low_3
[»] chr1 (7 HSPs)
chr1 (7-570)||(2569026-2569596)
chr1 (18-190)||(29119324-29119495)
chr1 (18-188)||(32676136-32676305)
chr1 (31-167)||(8462141-8462276)
chr1 (99-190)||(46435465-46435556)
chr1 (18-115)||(8809715-8809811)
chr1 (18-112)||(25161309-25161402)
[»] chr3 (16 HSPs)
chr3 (31-190)||(37742738-37742896)
chr3 (18-186)||(44380254-44380421)
chr3 (29-193)||(33509691-33509854)
chr3 (18-165)||(47426350-47426496)
chr3 (19-115)||(50934501-50934596)
chr3 (18-115)||(47186175-47186271)
chr3 (72-188)||(35094602-35094717)
chr3 (29-115)||(31187145-31187230)
chr3 (20-86)||(32319468-32319534)
chr3 (18-84)||(10179868-10179934)
chr3 (18-115)||(42664673-42664769)
chr3 (138-190)||(19619217-19619269)
chr3 (18-84)||(10018671-10018737)
chr3 (29-115)||(34029366-34029451)
chr3 (41-183)||(17466296-17466437)
chr3 (20-89)||(39498769-39498838)
[»] chr7 (6 HSPs)
chr7 (18-175)||(35341536-35341692)
chr7 (18-190)||(48250154-48250327)
chr7 (42-190)||(32694570-32694717)
chr7 (123-190)||(48072491-48072558)
chr7 (29-190)||(31306868-31307034)
chr7 (123-174)||(40856949-40857000)
[»] chr5 (13 HSPs)
chr5 (29-190)||(33858538-33858698)
chr5 (29-190)||(11607534-11607694)
chr5 (18-190)||(19357262-19357432)
chr5 (34-190)||(33271630-33271785)
chr5 (18-186)||(1826259-1826426)
chr5 (18-115)||(38010689-38010785)
chr5 (30-154)||(39570079-39570202)
chr5 (18-115)||(13015381-13015477)
chr5 (18-115)||(29989962-29990058)
chr5 (18-89)||(13086753-13086824)
chr5 (18-115)||(9827788-9827884)
chr5 (73-167)||(42148201-42148294)
chr5 (123-167)||(25482742-25482786)
[»] chr2 (10 HSPs)
chr2 (18-190)||(34392081-34392252)
chr2 (32-190)||(23863803-23863958)
chr2 (29-174)||(7381703-7381846)
chr2 (68-186)||(4779635-4779752)
chr2 (30-190)||(37357917-37358080)
chr2 (129-190)||(21606149-21606210)
chr2 (69-190)||(25275622-25275741)
chr2 (29-183)||(4775645-4775799)
chr2 (18-115)||(21603959-21604055)
chr2 (30-66)||(34904304-34904340)
[»] chr4 (14 HSPs)
chr4 (29-190)||(12473715-12473875)
chr4 (29-190)||(12528124-12528284)
chr4 (18-186)||(35869575-35869742)
chr4 (29-186)||(51811925-51812081)
chr4 (29-175)||(21260805-21260950)
chr4 (18-182)||(22343337-22343500)
chr4 (19-170)||(33249394-33249544)
chr4 (18-190)||(55590482-55590642)
chr4 (31-90)||(34829182-34829241)
chr4 (19-113)||(52910126-52910219)
chr4 (18-115)||(52012778-52012874)
chr4 (123-186)||(1796654-1796717)
chr4 (131-186)||(35781021-35781076)
chr4 (29-77)||(49998493-49998541)
[»] chr8 (7 HSPs)
chr8 (18-186)||(41179567-41179734)
chr8 (18-190)||(24337830-24338001)
chr8 (18-190)||(11254028-11254198)
chr8 (33-164)||(4708333-4708463)
chr8 (29-115)||(18168396-18168481)
chr8 (29-115)||(18631953-18632038)
chr8 (18-115)||(1514803-1514899)
[»] chr6 (6 HSPs)
chr6 (19-186)||(1211848-1212014)
chr6 (18-190)||(5403876-5404047)
chr6 (47-190)||(32644838-32644978)
chr6 (146-190)||(10503259-10503303)
chr6 (18-83)||(11753167-11753232)
chr6 (18-115)||(34245567-34245663)
[»] scaffold0519 (1 HSPs)
scaffold0519 (18-190)||(11195-11365)
[»] scaffold0229 (1 HSPs)
scaffold0229 (19-190)||(13005-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (18-190)||(34194-34363)
[»] scaffold0263 (1 HSPs)
scaffold0263 (48-115)||(23174-23240)


Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 570
Target Start/End: Original strand, 2569026 - 2569596
Alignment:
Q  7 gattattaagcccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgcttta 106  Q
    ||||||| |||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  2569026 gattattgagcccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaa-tgcttta 2569124  T
Q  107 tttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctatttgtcagcgtactttg 206  Q
    |||||||||       ||||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  2569125 tttgatatatttttt-aaagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatgttacacaagtgctatccgtcagcgtactttg 2569223  T
Q  207 gatgttggaac----------gtctttgcatgctcttgcttgactcatnnnnnnnntaatattggtatttatataaaaaaggcaaaagagaaaccaatta 296  Q
    |||||||||||          |||||||||||||||||||| ||||||         |||| ||||||||||| ||||||||||||||||||||||||||    
T  2569224 gatgttggaacttaatttgatgtctttgcatgctcttgcttcactcataaaaaaaaaaatagtggtatttatagaaaaaaggcaaaagagaaaccaatta 2569323  T
Q  297 ataattagataagagaacaaaaatcacact--ggtttccaattatattacatgatgttatcataaaggaatctcctagagagtttctttaaaataaaaaa 394  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2569324 ataattagataagagaacaaaaatcacactatggtttccaattatattacatgatgttatcataaaggaatctcctagagagtttctttaaaagaaaaaa 2569423  T
Q  395 tctccttgagagttggtcactataattaacttttacaatttattgtactaatttgaattcactcttttatatttgtgcatatttcttaacaaactccaaa 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||    
T  2569424 tctccttgagagttggtcactataattaacttttacaatttattgtactaatt---attcactcttttatatttgtgcat-tttcttaacaaactccaaa 2569519  T
Q  495 aagacataatgaatatttgcactgcttttcctcttctttgtat-ccccattcctttcatttttctattcctatgttt 570  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||    
T  2569520 aagacataatgaatatttgcactgcttttcctcttctttgtatcccccattcctttcattttcctatttctttgttt 2569596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 29119495 - 29119324
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||||||||||||||| |||||| |||| |||||||| ||||||||||||| || |||||| |||  | |||||||||||||||||      
T  29119495 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttacttta-tagatgctttatttgatatatt 29119397  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
         |||||||||||||  || |||||||||||||| |||| ||||||| | ||||| ||||||| ||||||    
T  29119396 tttttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaaatgctat 29119324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 32676136 - 32676305
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||||||||||||||| |||||| |||| |||||||| | ||  ||||||||||||||||| |||  |||||||||||||||||||      
T  32676136 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttacttta-taaatgctttatttgatatatt 32676234  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgct 188  Q
         ||||  |||||||  || |||| |||||||||||||||||||||| ||||||  ||||||| ||||    
T  32676235 tttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 8462141 - 8462276
Alignment:
Q  31 attaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtg 130  Q
    ||||| ||||||||| |||||||||||   |||||| ||||||||||||||||||||||  |||  ||||| ||||||| |||||       |||||| |    
T  8462141 attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttatttta-taaatgttttatttaatatacttttttaaagggcg 8462239  T
Q  131 tgccatgtgacacattctaattggacaatggtatata 167  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  8462240 tgccacgtgacacattttaattggacaatggtatata 8462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 46435556 - 46435465
Alignment:
Q  99 atgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    |||||||||||||||||       |||||||||| ||  ||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  46435556 atgctttatttgatatatatttttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctat 46435465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 8809811 - 8809715
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||| || ||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttacttta-taaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 25161309 - 25161402
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgat 112  Q
    ||||||| || ||||||| ||  ||||| |||||| ||||  ||||||||||||||||||||| ||||||||| |||  ||||| ||||||||||    
T  25161309 ccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttacttta-taaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 37742738 - 37742896
Alignment:
Q  31 attaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtg 130  Q
    ||||||||||||||| ||||||||||| | |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||       |||| |||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattacc-aatgctttatttgatatatttttttaaagagtg 37742836  T
Q  131 tgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    ||||| ||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  37742837 tgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctat 37742896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 44380254 - 44380421
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||||||||||||||| ||||||  |||  ||||||| |||||| |||||| |||| |||| |||  |||||||||||||||||||      
T  44380254 ccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttat-aaatgctttatttgatatact 44380352  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 186  Q
         ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44380353 tttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtg 44380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 33509691 - 33509854
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaaggg 128  Q
    |||||||||||| |||  |||||||||||  ||||||| |||||||||||||||||| |||| |||  | |||||||||||||| ||       |||||     
T  33509691 ccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttat-agatgctttatttgatgtatttttttaaagga 33509789  T
Q  129 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctatttg 193  Q
    |||||||  || |||||||||||| ||||||| |||||| ||||||  |||||||||||||||||    
T  33509790 tgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctatttg 33509854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 47426350 - 47426496
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||||||||||||||  |||||| |||| |||||||| |||||| |||||| ||||||||| |||  | |||||||||||||||||      
T  47426350 ccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttacttta-tagatgctttatttgatatatt 47426448  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtata 165  Q
         |||||||||||||  ||  ||||||||||||| ||||||||||    
T  47426449 tttttaaagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 50934501 - 50934596
Alignment:
Q  19 cacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    |||||| || ||||||||||||||||| |||||| |||| |||||||| |||||||||| |||||||||||| |||  |||||| ||||||||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttacttta-taaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 47186175 - 47186271
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||| || ||||||||||||||||| |||||| |||| |||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatata 47186271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 35094602 - 35094717
Alignment:
Q  72 tgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcat 171  Q
    ||||||||||||||||||| |||  ||||  |||||||||||||       ||||| |||| || |||||||||||||||||||||||| || ||| |||    
T  35094602 tgccacctaccaatgttactttat-aaatattttatttgatatatttttttaaaggatgtgtcacgtgacacattctaattggacaatgatacataccat 35094700  T
Q  172 tatgttacacaagtgct 188  Q
    |||| ||||||| ||||    
T  35094701 tatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 31187230 - 31187145
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  31187230 ccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 32319534 - 32319468
Alignment:
Q  20 acttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatg 86  Q
    ||||| || ||||||||||||||||| |||||| |||| |||||||| |||||||||||||| ||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 10179934 - 10179868
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 84  Q
    ||||||| || ||||||| ||||||||| |||||| |||| | |||||| |||||||||||||||||    
T  10179934 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 42664673 - 42664769
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||| || ||||||||||||||| | |||||| ||||  ||||| | |||||||||| |||||||||||  |||  ||||| |||||||||||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttatttta-taaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 19619217 - 19619269
Alignment:
Q  138 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    ||||||||| ||||||| |||||||||||| ||||||| |||||| |||||||    
T  19619217 tgacacattttaattgggcaatggtatataccattatggtacacatgtgctat 19619269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 10018737 - 10018671
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 84  Q
    ||||||| || ||||||| ||||||||| |||||| |||| | |||| | |||||||||||||||||    
T  10018737 ccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 34029451 - 34029366
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||||||||||||| |||||| ||||   |||| | |||||||||| ||| |||||||| |||  ||||| |||||||||||||    
T  34029451 ccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttacttta-taaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 183
Target Start/End: Original strand, 17466296 - 17466437
Alignment:
Q  41 caatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtga 140  Q
    ||||| ||||||||||| | |||||| |||||| |||||| ||||||||| |||  ||||| |||| ||||||||       ||||||| ||||| ||      
T  17466296 caatggtatatatcattggtcaattagagtgtgtcacctatcaatgttacttta-taaatgatttagttgatatatttttttaaagggtatgccacgtac 17466394  T
Q  141 cacattctaattggacaatggtatatatcattatgttacacaa 183  Q
    |||| ||||| ||  |||||||||||| ||||| | |||||||    
T  17466395 cacaatctaactgagcaatggtatataccattacggtacacaa 17466437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 39498838 - 39498769
Alignment:
Q  20 acttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgtta 89  Q
    ||||| || ||||||| ||||||||||||||||| ||| | |||||| |||||| |||||| | ||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgtta 39498769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 35341536 - 35341692
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || |||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||| |||  ||||| |||||||||||||      
T  35341536 ccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttacttta-taaatgttttatttgatatact 35341634  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatg 175  Q
         ||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  35341635 tttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatg 35341692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 48250154 - 48250327
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| |||  | ||||||||||||||||       
T  48250154 ccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatttt 48250252  T
Q  118 nnnnnaaagggtgtgc--catgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
         ||||||| |||  |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  48250253 tttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctat 48250327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 32694717 - 32694570
Alignment:
Q  42 aatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgac 141  Q
    ||||||||||| |||| |  ||||| ||||| ||| ||| ||||||||| |||  |||| ||||||||||||||       ||||||||||||| |||||    
T  32694717 aatgatatataccattggtaaattagagtgtcccatctatcaatgttactttat-aaattctttatttgatatatttttttaaagggtgtgccacgtgac 32694619  T
Q  142 acattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    ||||||||||| | |||||||||||| ||||||  ||||||||||||||    
T  32694618 acattctaattaggcaatggtatataccattatagtacacaagtgctat 32694570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 48072491 - 48072558
Alignment:
Q  123 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  48072491 aaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctat 48072558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 31307034 - 31306868
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaatt-acagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaa-- 125  Q
    ||||||| ||| |||||||||||||||||  |||||| | ||||||| ||||||||||||||| |||  ||||||||||||||||  |       |||      
T  31307034 ccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttat-aaatgctttatttgatgaaaataaataaatt 31306936  T
Q  126 ---gggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
       || |||| ||||||  ||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  31306935 ataggatgtgtcatgtggtacattctaattggacaatgatatatatcattatggtacacaaatgctat 31306868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 40856949 - 40857000
Alignment:
Q  123 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattat 174  Q
    |||||||||||||  ||||||||||||||||||||||| |||||| ||||||    
T  40856949 aaagggtgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 33858698 - 33858538
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaaggg 128  Q
    ||||||||||||||||  |||||||||||  ||||||| ||||||||||||||||||||||| |||  ||||| |||||||||||||       ||||||    
T  33858698 ccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttat-aaatgttttatttgatatacttttttaaaggg 33858600  T
Q  129 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  33858599 tgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctat 33858538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 11607694 - 11607534
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaaggg 128  Q
    ||||||||||||||||| |||||| ||||  ||||||| |||||||||||||||||| |||| |||  ||||| |||||||||||||       ||||||    
T  11607694 ccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttat-aaatgttttatttgatatacttttttaaaggg 11607596  T
Q  129 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    ||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11607595 tgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctat 11607534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 19357432 - 19357262
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || |||||| |||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||||      
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacttta-taaatgctttatttgatata-t 19357335  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
         ||||| ||| ||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  19357334 tttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctat 19357262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 33271630 - 33271785
Alignment:
Q  34 aaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgc 133  Q
    |||||||||||||||||||||||| |||||||| |||||| || ||| ||||||||| ||   |||||||||||||||||||       ||||| || ||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttac-ttgataaatgctttatttgatatatttttttaaaggatgcgc 33271728  T
Q  134 catgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    || ||| |||||||||||||| |||| ||||||| ||||||| |||| |||||||||    
T  33271729 cacgtggcacattctaattgggcaatagtatataccattatggtacataagtgctat 33271785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 1826259 - 1826426
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||||| ||||||||| |||||| |||| | |||||| |||||| ||||||||||| |||| ||   | |||||||||||||||||      
T  1826259 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattac-tttgtagatgctttatttgatatatt 1826357  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 186  Q
         ||||  |||||||  || |||||| |||||| |||||| |||||||||||||| ||||||||||    
T  1826358 tttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtg 1826426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 38010785 - 38010689
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||| || ||||||||||||||||| |||||| |||| |||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatata 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 39570202 - 39570079
Alignment:
Q  30 cattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggt 129  Q
    |||||| ||| ||||| |||||| |||| |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||       |||||||    
T  39570202 cattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatacttttttaaagggt 39570104  T
Q  130 gtgccatgtgacacattctaattgg 154  Q
    ||||||  ||||| |||||||||||    
T  39570103 gtgccacctgacatattctaattgg 39570079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 13015381 - 13015477
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||| || ||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||  |||||||||||||    
T  13015381 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 29989962 - 29990058
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||| || ||||||||||| ||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 13086753 - 13086824
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgtta 89  Q
    ||||||| || ||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgtta 13086824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 9827788 - 9827884
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||| || ||||||||||||||||| |||||| | || | |||||| ||||| |||||||||||| |||| |||  ||||  |||||||||||||    
T  9827788 ccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattacttta-taaatattttatttgatata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 42148201 - 42148294
Alignment:
Q  73 gccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 167  Q
    |||||||||||||||||| |||  ||||| |||||||||||||       ||||||||| ||| ||  ||||||||||||| |||||||||||||    
T  42148201 gccacctaccaatgttactttat-aaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtatata 42148294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 25482786 - 25482742
Alignment:
Q  123 aaagggtgtgccatgtgacacattctaattggacaatggtatata 167  Q
    ||||||||||||||||| ||||| |||||||| ||||| ||||||    
T  25482786 aaagggtgtgccatgtggcacatcctaattgggcaatgttatata 25482742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 34392252 - 34392081
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||||      
T  34392252 ccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttat-aaatgctttatttgatatatt 34392154  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
         |||||||||||||  || |||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  34392153 tttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctat 34392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 23863958 - 23863803
Alignment:
Q  32 ttaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgt 131  Q
    |||||||||||||| |||||   ||| | |||||| ||||||||||||||||||||||| |||  |||||||||||||||||||       |||||||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttat-aaatgctttatttgatatatatttttaaagggtgt 23863862  T
Q  132 gccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    ||||  || |||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  23863861 gccacatggcacattctaattggacaatgatatatatcattatggtacactagtgctat 23863803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 7381703 - 7381846
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaaggg 128  Q
    ||||||||||||||||| ||||||  ||| |||||||| ||||||||| ||||||||||||| |||  |||| ||||||||||||||       |||||     
T  7381703 ccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttacttta-taaattctttatttgatata-ttttttaaagga 7381800  T
Q  129 tgtgccatgtgacacattctaattggacaatggtatatatcattat 174  Q
    |||| ||||||||||||| ||||||| |||| ||||||| ||||||    
T  7381801 tgtgtcatgtgacacattttaattgggcaatagtatataccattat 7381846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 4779635 - 4779752
Alignment:
Q  68 agtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 167  Q
    |||||||| |||| ||||||||| |||  |||| ||||||||||||||       ||||| |||| || |||||||||||||||||||||||||||||||    
T  4779635 agtgtgccgcctaacaatgttactttat-aaatactttatttgatatatttttttaaaggatgtgtcacgtgacacattctaattggacaatggtatata 4779733  T
Q  168 tcattatgttacacaagtg 186  Q
     ||||||| ||||||||||    
T  4779734 ccattatgatacacaagtg 4779752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 37358080 - 37357917
Alignment:
Q  30 cattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnn----aaa 125  Q
    ||||||||||||||||||||||| ||||  | ||||| |||||| |||||| ||||||||| |||  ||||||||||||| ||||            |||    
T  37358080 cattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttat-aaatgctttatttaatatttttttttttttaaa 37357982  T
Q  126 gggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
       ||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  37357981 ctatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctat 37357917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 21606149 - 21606210
Alignment:
Q  129 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  21606149 tgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctat 21606210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 25275741 - 25275622
Alignment:
Q  69 gtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatat 168  Q
    |||||||||||| ||||||||| ||   |||| ||||||||||||||       ||||| ||||||| |||| ||||||||||||||||||| ||||||     
T  25275741 gtgtgccacctatcaatgttactttt--aaatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattggacaatgatatatac 25275644  T
Q  169 cattatgttacacaagtgctat 190  Q
    ||||||| |||| |||||||||    
T  25275643 cattatgatacagaagtgctat 25275622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 4775645 - 4775799
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaaggg 128  Q
    |||||||| |||||||||||||||| ||| |||||||| | |||  || |||||||| |||| |||  || || ||||||| |||||       |||||     
T  4775645 ccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatatttttttaaagga 4775744  T
Q  129 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaa 183  Q
    |||||||  || |||| | |||||||||||||||||||| ||||||| |||||||    
T  4775745 tgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaa 4775799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 21603959 - 21604055
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||| || ||||||||||||||||| |||||| ||||  ||||||| |||||  |||||||||||||||| |||  ||||| |||||||||||||    
T  21603959 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttacttta-taaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 34904340 - 34904304
Alignment:
Q  30 cattaaggtaccaatgatatatatcatttgccaatta 66  Q
    |||||||||||||||| |||||||||||||| |||||    
T  34904340 cattaaggtaccaatgttatatatcatttgctaatta 34904304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 12473715 - 12473875
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaaggg 128  Q
    ||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |||  | |||||||||||||||||       ||||||    
T  12473715 ccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatatttttttaaaggg 12473813  T
Q  129 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    |||| ||  ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12473814 tgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12473875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 12528124 - 12528284
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaaggg 128  Q
    ||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |||  | |||||||||||||||||       ||||||    
T  12528124 ccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatatttttttaaaggg 12528222  T
Q  129 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    |||| ||  ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12528223 tgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12528284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 35869742 - 35869575
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||||||||||||||| |||||| ||||  ||||||| | |||||||||||||||||||||  ||  ||||| |||||||||||||      
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatat-aaatgttttatttgatatact 35869644  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 186  Q
         ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| || |||||||    
T  35869643 tttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 51811925 - 51812081
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaaggg 128  Q
    ||||||||||| ||| ||||||||| ||| |||||||| ||| ||||||||||||||||||| |||  ||||  ||| |||||||||       ||||||    
T  51811925 ccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttat-aaattttttttttgatatatttttttaaaggg 51812023  T
Q  129 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 186  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||    
T  51812024 tgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtg 51812081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 21260805 - 21260950
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaaggg 128  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||       ||||||    
T  21260805 ccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatatttttttaaaggg 21260903  T
Q  129 tgtgccatgtgacacattctaattggacaatggtatatatcattatg 175  Q
    |||||||  || ||||||||||||||  |||| |||||| |||||||    
T  21260904 tgtgccacatggcacattctaattgggtaatgttatataccattatg 21260950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 22343337 - 22343500
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||||||||| ||||| |||||||||||  ||||||| |||||| || ||| ||||||||| |||  |||||||||||||||||||      
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttacttta-taaatgctttatttgatatatt 22343435  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacaca 182  Q
         ||||| |||||||  |||||||||||||||| |||||| |||||| ||||||| ||||||    
T  22343436 attttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacaca 22343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 33249544 - 33249394
Alignment:
Q  19 cacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 118  Q
    |||||| || |||||||||||| |||| ||||||  ||| |||||||| |||||| |||||||||||||||| |||  |||||||||||||||||||       
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttacttta-taaatgctttatttgatatatat 33249446  T
Q  119 nnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatca 170  Q
        |||||||||||||  || |||| ||||||||  ||||| |||||||||    
T  33249445 ttttaaagggtgtgccacatggcacaatctaattgagcaatgatatatatca 33249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 55590482 - 55590642
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||||||||||||||| |||||||||||   |||||| |||||| |||||||||||||||            ||||||||||||||      
T  55590482 ccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtta------------ctttatttgatatact 55590569  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
         ||||| ||||||| |||||||||||||||||| |||||| ||||| ||||||| ||| ||||||||||    
T  55590570 tttttaaaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctat 55590642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 34829241 - 34829182
Alignment:
Q  31 attaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttac 90  Q
    ||||||||||||||||||||||||| | |||||||| |||||| ||||||||||||||||    
T  34829241 attaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttac 34829182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 52910219 - 52910126
Alignment:
Q  19 cacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgata 113  Q
    |||||| || |||| | |||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattacttta-taaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 52012778 - 52012874
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||| || ||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttacttta-taaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 1796654 - 1796717
Alignment:
Q  123 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 186  Q
    ||||| |||| || ||| |||| | |||||||||||||||||||| ||||||| ||||||||||    
T  1796654 aaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtg 1796717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 35781021 - 35781076
Alignment:
Q  131 tgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 186  Q
    ||||| ||| |||||||||||||| |||||||||||| ||||||| ||| ||||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtacgcaagtg 35781076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 49998493 - 49998541
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccac 77  Q
    ||||||||||||||||  ||||||||||| ||||||||  |||||||||    
T  49998493 ccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 41179734 - 41179567
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||| |||  ||||| ||||||| |||||      
T  41179734 ccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttacttta-taaatgttttatttaatatatt 41179636  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 186  Q
         || || |||||||  || |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  41179635 tttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 24338001 - 24337830
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || | ||||||||| ||||| |||||| |||  | |||||| ||||||||| ||||||||||||| |||  | |||||||||||||||||      
T  24338001 ccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttat-agatgctttatttgatatata 24337903  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
         |||||||||||||  |  ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  24337902 tttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctat 24337830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 11254198 - 11254028
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || |||||||  ||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||| |||  ||||| |||||||||||||      
T  11254198 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttat-aaatgttttatttgatataca 11254101  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
         ||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11254100 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11254028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 4708463 - 4708333
Alignment:
Q  33 taaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtg 132  Q
    |||||||||||||  |||||||||  |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||       ||||||||||    
T  4708463 taaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatatatttttaaagggtgtg 4708365  T
Q  133 ccatgtgacacattctaattggacaatggtat 164  Q
    ||| ||| |||||||||||| | |||||||||    
T  4708364 ccacgtggcacattctaattaggcaatggtat 4708333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 18168396 - 18168481
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||||||||||||| |||||||||||   |||||| ||||| |||||||||||| |||| |||  |||| ||||||||||||||    
T  18168396 ccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttacttta-taaatactttatttgatata 18168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 18631953 - 18632038
Alignment:
Q  29 ccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||||||||||||| |||||||||||   |||||| ||||| |||||||||||| |||| |||  |||| ||||||||||||||    
T  18631953 ccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttacttta-taaatactttatttgatata 18632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 1514803 - 1514899
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||| || ||||||||||||||||| |||||| ||||   |||| | ||||| |||| |||||||||||| |||  ||||| |||||||||||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttacttta-taaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 1212014 - 1211848
Alignment:
Q  19 cacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 118  Q
    |||||| || ||||||||||||||||| |||||| |||| || |||||  |||||||||||  ||||||||| ||| | | ||||||||||||||||       
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcga-tgctttatttgatatattt 1211916  T
Q  119 nnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 186  Q
        ||||||||||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||    
T  1211915 ttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtg 1211848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 5404047 - 5403876
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || |||||||||||| |||| ||||||| ||| | || ||| ||| ||||||||||||||||||| |||  | ||| |||||||||||||      
T  5404047 ccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttat-agatgttttatttgatatatt 5403949  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
         |||||| ||  ||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5403948 tttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctat 5403876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 32644978 - 32644838
Alignment:
Q  47 tatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacatt 146  Q
    ||||||||||| ||||||||  ||||| ||||||| |||||||| |||  |||| ||||||||| ||||       |||||||||||||  ||| ||| |    
T  32644978 tatatatcattggccaattaaggtgtgtcacctacaaatgttacttta--aaatactttatttgttatatttttttaaagggtgtgccacatgatacaat 32644881  T
Q  147 ctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||    
T  32644880 ctaattgaacaatggtatataccattatg-tacacaagtgctat 32644838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 10503303 - 10503259
Alignment:
Q  146 tctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  10503303 tctaattggacaatggtatataccattatggtacacaagtgctat 10503259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 11753167 - 11753232
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacca 83  Q
    ||||||| || ||||||||||||||||| |||||| |||  |||||||| ||||| ||||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 34245567 - 34245663
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    ||||||| || |||||||||||  |||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttacttta-taaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 11195 - 11365
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || |||||||  ||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||| |||  ||||| |||||||||||||      
T  11195 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttat-aaatgttttatttgatataca 11292  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
         ||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11293 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 13176 - 13005
Alignment:
Q  19 cacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 118  Q
    |||||| || ||||||||||||||||| |||||| |||| || |||||  |||||||||||  ||||||||| ||| | | ||||||||||||||||       
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcga-tgctttatttgatatattt 13078  T
Q  119 nnnnaaagggt-gtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
        ||||||| |||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||||||    
T  13077 ttttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctat 13005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 34194 - 34363
Alignment:
Q  18 ccacttgggtgccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 117  Q
    ||||||| || ||||||||||||||||| ||||||| ||| |||||||| |||||||||| ||||||| |||| |||  ||||  |||||||||||||      
T  34194 ccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattacttta-taaatattttatttgatata-t 34291  T
Q  118 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 190  Q
         |||||||||| || ||||||||||||||||||| |||| |||||| | ||||| ||||||| ||||||    
T  34292 tttttaaagggtgtgtcacgtgacacattctaattggataatgttatata-ccttatggtacacaaatgctat 34363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 23240 - 23174
Alignment:
Q  48 atatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 115  Q
    |||||||||| |||||||| |||||||||||||||||| |||| |||  ||||  |||||||||||||    
T  23240 atatatcattggccaattagagtgtgccacctaccaattttacttta-taaatattttatttgatata 23174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University