View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21122_low_4 (Length: 475)

Name: NF21122_low_4
Description: NF21122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21122_low_4
NF21122_low_4
[»] chr7 (3 HSPs)
chr7 (16-355)||(38231305-38231642)
chr7 (393-457)||(38231680-38231744)
chr7 (45-232)||(19831011-19831194)
[»] chr8 (3 HSPs)
chr8 (205-283)||(30152076-30152154)
chr8 (19-64)||(30152184-30152229)
chr8 (403-449)||(30151918-30151964)
[»] chr6 (4 HSPs)
chr6 (205-283)||(7694858-7694936)
chr6 (19-64)||(7694966-7695011)
chr6 (403-449)||(7694706-7694752)
chr6 (308-355)||(7694802-7694850)
[»] chr4 (2 HSPs)
chr4 (92-275)||(55862915-55863098)
chr4 (403-449)||(55863208-55863254)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 38231305 - 38231642
Alignment:
Q  16 atcaaataatagcaaactcttatacttagcttgcttggtagtggtttttgggatttgaaattttttcatgtaaaagaaaaaagatcaaacttgcttcagc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||||||||||    
T  38231305 atcaaataatagcaaactcttatacttagcttgcttggtagtggtttttgggttttgaatttttt--atgtaaaagaaaaaagatcaaacttgcttcagc 38231402  T
Q  116 cttgcaagtggtatttctacacatgaagaaacaatggaaatgattgggagctttgatttgaagccgagccaattacaacagaatattagaattatgttat 215  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38231403 cttgcaagtggtatttctacacatgaagaaacaatggaaacatttgggagctttgatttgaagccgagccaattacaacagaaaattagaattatgttat 38231502  T
Q  216 gaatttggttttggtttctttggatttgtttgtgagttgaggatctttatggttcataataatttcaagactagtctaatttcaatctatttgattatta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38231503 gaatttggttttggtttctttggatttgtttgtgagttgaggatctttatggttcataataatttcaagactagtctaatttcaatctatttgattatta 38231602  T
Q  316 gtattaagtttttagactttgtaatgagctcaaccacttt 355  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  38231603 gtattaagtttttagactttgtaatgagctcaactacttt 38231642  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 393 - 457
Target Start/End: Original strand, 38231680 - 38231744
Alignment:
Q  393 ttgctatgaaagatgaagttgatgagttagatttggtgtggctggactatgataagagttactag 457  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38231680 ttgctatgagagatgaagttgatgagttagatttggtgtggctggattatgataagagttactag 38231744  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 232
Target Start/End: Complemental strand, 19831194 - 19831011
Alignment:
Q  45 cttgcttggtagtggtttttgggatttgaaattttttcatgtaaaagaaaaaagatcaaacttgcttcagccttgcaagtggtatttctaca-catgaag 143  Q
    ||||||| ||| |||| |||||| |||||| |||| |||||| |||   |||||||  ||||||||||| | ||||||||||||||||||   | || |     
T  19831194 cttgcttcgtaatggtctttgggttttgaa-ttttctcatgttaaa---aaaagattgaacttgcttcaacgttgcaagtggtatttctatggcttggaa 19831099  T
Q  144 aaacaatggaaatgattgggagctttgatttgaagccgagccaattacaacagaatattagaattatgttatgaatttggttttggttt 232  Q
    ||||||| |||  |||||| ||||| |||||||||  |||||||||||| ||||| ||||||| |||  ||||||||||||||||||||    
T  19831098 aaacaatagaagggattggaagcttggatttgaagtagagccaattacagcagaaaattagaa-tatcatatgaatttggttttggttt 19831011  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 30152154 - 30152076
Alignment:
Q  205 aattatgttatgaatttggttttggtttctttggatttgtttgtgagttgaggatctttatggttcataataatttcaa 283  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||    
T  30152154 aattatgttatgaatttggttttggtttctttgggtttgtttgtaagttgaggttctttatggttcataataatttcaa 30152076  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 30152229 - 30152184
Alignment:
Q  19 aaataatagcaaactcttatacttagcttgcttggtagtggttttt 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30152229 aaataatagcaaactcttatacttagcttgcttggtagtggttttt 30152184  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 449
Target Start/End: Complemental strand, 30151964 - 30151918
Alignment:
Q  403 agatgaagttgatgagttagatttggtgtggctggactatgataaga 449  Q
    |||||||||||||||||| |||||||||||| ||||||| |||||||    
T  30151964 agatgaagttgatgagtttgatttggtgtggatggactacgataaga 30151918  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 7694936 - 7694858
Alignment:
Q  205 aattatgttatgaatttggttttggtttctttggatttgtttgtgagttgaggatctttatggttcataataatttcaa 283  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||    
T  7694936 aattatgttatgaatttggttttggtttctttgggtttgtttgtaagttgaggttctttatggttcataataatttcaa 7694858  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 7695011 - 7694966
Alignment:
Q  19 aaataatagcaaactcttatacttagcttgcttggtagtggttttt 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7695011 aaataatagcaaactcttatacttagcttgcttggtagtggttttt 7694966  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 403 - 449
Target Start/End: Complemental strand, 7694752 - 7694706
Alignment:
Q  403 agatgaagttgatgagttagatttggtgtggctggactatgataaga 449  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  7694752 agatgaagttgatgagttagatttggtgtggatggactatgataaga 7694706  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 7694850 - 7694802
Alignment:
Q  308 gattattagtattaagtttttagac-tttgtaatgagctcaaccacttt 355  Q
    |||||||||||||||| ||||| || ||||||||||||||| |||||||    
T  7694850 gattattagtattaagcttttatacatttgtaatgagctcagccacttt 7694802  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 92 - 275
Target Start/End: Original strand, 55862915 - 55863098
Alignment:
Q  92 aaaaaagatcaaacttgcttcagccttgcaagtggtatttctac-acatgaagaaacaatggaaatgattgggagctttgatttgaagccgagccaatta 190  Q
    |||| ||| |||||||||||||||||||| | ||| |||||||  |||||| |||| ||| ||| |||| || ||||| ||||||||||  |||||||||    
T  55862915 aaaatagaccaaacttgcttcagccttgccaatggcatttctatgacatgatgaaataatagaagtgataggtagcttggatttgaagcatagccaatta 55863014  T
Q  191 caacagaatattagaattatgttatgaatttggttttggtttctttggatttgtttgtgagttgaggatctttatggttcataat 275  Q
    |||||||| |||||||  | |  | |||  | |||||||||||||||| ||||||||||| |||||| |||||||||||||||||    
T  55863015 caacagaaaattagaa-cacgacaggaaactagttttggtttctttgggtttgtttgtgaattgaggttctttatggttcataat 55863098  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 55863208 - 55863254
Alignment:
Q  403 agatgaagttgatgagttagatttggtgtggctggactatgataaga 449  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||    
T  55863208 agatgaagtttatgagttagatttggtgtggatagactatgataaga 55863254  T

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