View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21122_low_5 (Length: 345)
Name: NF21122_low_5
Description: NF21122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21122_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 6440584 - 6440908
Alignment:
| Q |
10 |
aagaaaattggttaccgtaccttagtgacgcaattctattctattcagtgtaaatgtagttgtttgtgcccattag-------ctacttccttcatttat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6440584 |
aagaaaattggttaccgtaccttagtgacgcaattctattctattcagtgtaaatgtagttgtttgtgcccattaggcattagctacttccttcatttat |
6440683 |
T |
|
| Q |
103 |
acaccacccttgtagctagctccattgtcatctctcactcaacactactattgtcctcaacaactaccactccaatgcatttt-ttcccctaattacttc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6440684 |
acaccacccttgtagctagctccattgtcatctctcactcaacactactattgtcctcaacaactaccactccaatgcatttttttcccctaattacttc |
6440783 |
T |
|
| Q |
202 |
atataccccccttctagtacagcctctaaccgcccccaacccaaaacagataaacctcctattctttatcttaccttagtcactgacattatttcaccat |
301 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6440784 |
atataccccccttctagtacatcctctaaccgcccccaacccaaaacagataaacctcctattctttatcttaccttagtcactgacattatttcaccat |
6440883 |
T |
|
| Q |
302 |
tttagaacgtttcactatcaaaacg |
326 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6440884 |
tttagaacgtttcactatcaaaacg |
6440908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University