View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21122_low_8 (Length: 325)
Name: NF21122_low_8
Description: NF21122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21122_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 278
Target Start/End: Original strand, 1228076 - 1228352
Alignment:
| Q |
12 |
atgagaagccttttgaacatgcagcaaggaaaatggagccattgttacctaaaagaggttgaagttaaaccttccagaaataacaatagctatagaaaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1228076 |
atgagaagccttttgaacatgcagcaaggaaaatggagtcattgttaccaaaaaggggttgaagttaaaccttccagaaataacaataactatagaaaat |
1228175 |
T |
|
| Q |
112 |
agattcatacatt------gtctccgaggcattattatgaatatgtgaactatgccatgatatgacatataaaaagtcatttatgtaattggcatctggt |
205 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1228176 |
agattcatacattaaaattgtctccaaagcattattatgaatatatgaactatgccatgatatgacatataaaaagtcatttatgtaattggcatctggt |
1228275 |
T |
|
| Q |
206 |
catgtaatattagtatgccaaggaatacaaaaattatcttcattat----taattttgttaacttgagtgtttgtct |
278 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
1228276 |
catgtagtattagtatgccaaggaataaaaaaattatgttcattatggagtaatattgttaacttgagtgcttgtct |
1228352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 41966715 - 41966850
Alignment:
| Q |
12 |
atgagaagccttttgaacatgcagcaaggaaaatggagccattgttacctaaaagaggttgaagttaaaccttccagaaataacaatagctatagaaaac |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
41966715 |
atgagaagccttttcaacatgcagcaaggaaaatggagccattgttacctaaaagaggttgaatttaaaccttccagaaataacgataactatagaaaac |
41966814 |
T |
|
| Q |
112 |
agattcatacattgtctccgaggcattattatgaat |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41966815 |
agattcatacattgtctccgaggcattattatgaat |
41966850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University