View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21122_low_9 (Length: 294)
Name: NF21122_low_9
Description: NF21122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21122_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 32618105 - 32618309
Alignment:
| Q |
19 |
acatgtcagataaagaaaagagtaaattttagacactttaaacatcaaatgaacttgtatatttgaaaagttgttcatgattgnnnnnnnn-acagcact |
117 |
Q |
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| T |
32618105 |
acatgtcagataaagaaaagagtaaattttagacactttaaacatcaaatgaacttgtatatttgaaaagttgttcatgattgtttttttttacagcact |
32618204 |
T |
|
| Q |
118 |
tcaagttttctgcaaaatacaattgaagaggagaagatagagattagaaagtttgaaaacctacaaaataaattgaagagaagaagatggggattagaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32618205 |
tcaagttttctgcaaaatacaattgaagaggagaagatagagattagaaagtttgaaaacctacaaaataaattgaagagaagaagatggggattagaaa |
32618304 |
T |
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| Q |
218 |
gtttg |
222 |
Q |
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||||| |
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| T |
32618305 |
gtttg |
32618309 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 3593726 - 3593649
Alignment:
| Q |
19 |
acatgtcagataaagaaaagagtaaattttagacactttaaacatcaaatgaacttgtatatttgaaaagttgttcat |
96 |
Q |
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|||||| | ||||||||||||| |||||||||||||| |||||||||| |||||||||| || ||||||||||||||| |
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| T |
3593726 |
acatgttaaataaagaaaagagcaaattttagacactataaacatcaagtgaacttgtagatctgaaaagttgttcat |
3593649 |
T |
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