View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21123_high_1 (Length: 420)
Name: NF21123_high_1
Description: NF21123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21123_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 413
Target Start/End: Original strand, 3324124 - 3324523
Alignment:
| Q |
20 |
ttttcaatgaattcatagcaggataatattttttcctcaaacagaagcccttcagtctgcttcaaatgcaaaaatagcttcgacacttcagattaaaagc |
119 |
Q |
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| T |
3324124 |
ttttcaatgaattcatagcaggataatattttttcctcaaacagaagcccttcagtctgcttcaaatacaaaaatagcttcgacacttcagattaaaagt |
3324223 |
T |
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| Q |
120 |
atatcacatgcccgacaagtgttccaacaccgacacaacgcttttacatgtataatcagttctattttctcaaattattactaaagtctgcatgttagta |
219 |
Q |
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| T |
3324224 |
atatcacatgtccgacaagtgttccaacaccgacacaacgccgttacatg--taatcagttctattttctcaaattattactgaagtctacatgttagta |
3324321 |
T |
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| Q |
220 |
tcagtgtcgtgtttgacgtttgtgccgatgtttaatttattgtcatgtgcataa--------aatacaacaatacttgtatgcaaaatttaatggtgaaa |
311 |
Q |
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| T |
3324322 |
tcagtgtcgtgtttgacgtttgtgccgatatttaatttattgtcatgtgcataatatgaatcaatacaacaatacttgtatgcaaaatttaatggtgaaa |
3324421 |
T |
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| Q |
312 |
agagaatgttacccttttatatgcatcataatcatgtccactcctaagaagctcagcaatgtcattcttcgtaaacttctgaatagctcttctcttcttc |
411 |
Q |
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| T |
3324422 |
agagaatattacccttttatatgcatcataatcatgtccactcctaagaagctcagcaatgtcattcttcgtaaacttctgaatagctcttctcttcttc |
3324521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 8013863 - 8013924
Alignment:
| Q |
173 |
aatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtcgtgtttg |
234 |
Q |
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| T |
8013863 |
aatcacttatattttttcaaattattactagtgtctacatgttagtatcagtgtcgtgtttg |
8013924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 1116428 - 1116368
Alignment:
| Q |
172 |
taatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtcgtgtt |
232 |
Q |
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|||||| ||| |||||||||||||||||| || |||| ||||||||| ||||||| ||||| |
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| T |
1116428 |
taatcacttcaattttctcaaattattaccaatgtctacatgttagtgtcagtgttgtgtt |
1116368 |
T |
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