View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21123_high_3 (Length: 407)
Name: NF21123_high_3
Description: NF21123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21123_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 3323719 - 3324070
Alignment:
| Q |
18 |
tcaacttctcaacaaactaaggaacaacaattatttaatcaatccttagaaacaataataataaatatactctacaagggtggatcattggttttacctc |
117 |
Q |
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| T |
3323719 |
tcaacttctcaacaaactaaggaacaacaattatttaatcaatccttagaaacaataataataaatatactctacaagggtggatcattggttttacctc |
3323818 |
T |
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| Q |
118 |
tttatttatgtatggttcaagagaatttccatatttttctgtaaacaaagttctaaggtcacgcaattctggtaggtcagaaattctggctgcagcatac |
217 |
Q |
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| T |
3323819 |
tttatttatgtatggttcaagagaatttccatatttttctgtaaacaaagttctaaggtcacgcaattctggtaggtcagaaattcttgctgcagcatac |
3323918 |
T |
|
| Q |
218 |
atcaatgatggtatagcttccttgcattcctcagggcattcactatataagaaattagttcatattatataaataagaagaggtatgattttttagttgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
3323919 |
atcaatgatggtatagcttccttgcattcctcagggcattcactatataagaaattagttcatattatataaataagaagaggtttgatttttgagttgc |
3324018 |
T |
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| Q |
318 |
tattcaaaacaatgattatcatgctattttttcatgtttgagaattgaaaag |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3324019 |
tattcaaaacaatgattatcatgctattttttcatgtttgagaattgaaaag |
3324070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 3324131 - 3324085
Alignment:
| Q |
361 |
attgaaaagtttattggatgcatatcagatcatcttgaagaattaat |
407 |
Q |
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| T |
3324131 |
attgaaaagtttattggatgcatatcagatcatcttgaagaattaat |
3324085 |
T |
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