View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_high_12 (Length: 251)
Name: NF21124_high_12
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 31127862 - 31127640
Alignment:
| Q |
19 |
cctttatccattgcaggaaccaccctaaactgcctcatgatcccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31127862 |
cctttatccattgcaggaaccaccctaaactgcctcatgatcccggcaaccacccttttcatctgcaagaacgccatttcctttcctaaacacacccttg |
31127763 |
T |
|
| Q |
119 |
gcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31127762 |
gcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatctctcaggtcgaaactcagc |
31127663 |
T |
|
| Q |
219 |
ccaatcgggtccccatatattct |
241 |
Q |
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|||||||||||||||||| |||| |
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| T |
31127662 |
ccaatcgggtccccatattttct |
31127640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 31078544 - 31078317
Alignment:
| Q |
19 |
cctttatccattgcaggaaccaccctaaactgcctcatgatcccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttg |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
31078544 |
cctttatccattgcaggaaccaccctaaactgcctcatgatccctgcaaccaccctcttcatctgcaagaacgccatttcctttcctaaacacaccctcg |
31078445 |
T |
|
| Q |
119 |
gcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagc |
218 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |||||||| ||||| |||||||||||||| |
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| T |
31078444 |
gcccagcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagc |
31078345 |
T |
|
| Q |
219 |
ccaatcgggtccccatatattcttcgac |
246 |
Q |
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|||||| |||||||||| |||| |||| |
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| T |
31078344 |
ccaatcaagtccccatattttctccgac |
31078317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 31132504 - 31132348
Alignment:
| Q |
85 |
aagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaa |
184 |
Q |
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|||||||||||||| || || ||||||||||| |||||||| ||||||| || |||| |||||||||||||||||| ||||||||| |||||||| ||| |
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| T |
31132504 |
aagaacgccatttctttccctaaacacaccctcggcccagcttgaaaaatcggataagtataaggatccatcccaacaaagctccattttccatcgtcag |
31132405 |
T |
|
| Q |
185 |
cttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatatattct |
241 |
Q |
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|| | |||||||| |||||||||| ||||||||||||||||| ||||||||| |||| |
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| T |
31132404 |
ctcgactcaaccacctctcaggtcaaaactcagcccaatcggatccccatattttct |
31132348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 38643038 - 38642947
Alignment:
| Q |
61 |
ccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatc |
152 |
Q |
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|||||||| | ||||||||| |||| || |||||||| || |||||||| | ||| ||||||||||||||||||| |||| || ||||||| |
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| T |
38643038 |
ccagcaacaatccttttcatttgcataaatgccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatc |
38642947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 38655946 - 38655855
Alignment:
| Q |
61 |
ccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatc |
152 |
Q |
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|||||||| | ||||||||| |||| || |||||||| || |||||||| | ||| ||||||||||||||||||| |||| || ||||||| |
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| T |
38655946 |
ccagcaacaatccttttcatttgcataaatgccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatc |
38655855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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