View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21124_high_15 (Length: 240)
Name: NF21124_high_15
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_high_15 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35420502 - 35420741
Alignment:
| Q |
1 |
ctttcatacaaaatgctctcatatttttcataaagagtgtattgctcagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35420502 |
ctttcatacaaaatgctctcatatttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcaactccgtattcttgtccaatgtgt |
35420601 |
T |
|
| Q |
101 |
cgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35420602 |
cgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgt |
35420701 |
T |
|
| Q |
201 |
ttttgtgggtttattgttgtaaggtgtggcaggtctgtgt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35420702 |
ttttgtgggtttattgttgtaaggtgtggcaggtctgtgt |
35420741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35429641 - 35429880
Alignment:
| Q |
1 |
ctttcatacaaaatgctctcatatttttcataaagagtgtattgctcagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429641 |
ctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgt |
35429740 |
T |
|
| Q |
101 |
cgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35429741 |
cgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgt |
35429840 |
T |
|
| Q |
201 |
ttttgtgggtttattgttgtaaggtgtggcaggtctgtgt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429841 |
ttttgtgggtttattgttgtaaggtgtggcaggtctgtgt |
35429880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35423501 - 35423543
Alignment:
| Q |
1 |
ctttcatacaaaatgctctcatatttttcataaagagtgtatt |
43 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
35423501 |
ctttcatacaaaatgctctcatgtttttcatgaagagtgtatt |
35423543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University