View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_high_2 (Length: 604)
Name: NF21124_high_2
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 92 - 333
Target Start/End: Complemental strand, 4240674 - 4240433
Alignment:
| Q |
92 |
ccctatccctttgtactgtccactgttctttctctgtgtgttattataactcatcgatccatccatccatgactcctgtttctctgaatccaccaggtcc |
191 |
Q |
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| T |
4240674 |
ccctatccctttgtactgtccactgttctttctctgtgtgttattataactcatcgatccatccatccatgactcctgtttctctgaatccaccaggtcc |
4240575 |
T |
|
| Q |
192 |
taattccttactacaaggtcaaaaccaattcttcaatatttctcctgttgatcaggacactcctaccttctttaacttacttggagactttggagaaaac |
291 |
Q |
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| T |
4240574 |
taattccttactacaaggtcaaaaccaattcttcaatatttctcctgttaatcaggacactcctaccttctttaacttacttggagactttggagaaaac |
4240475 |
T |
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| Q |
292 |
tatgatcatcatcatcatcaggtaagatcatatatgatccct |
333 |
Q |
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| T |
4240474 |
tatgatcatcatcatcatcaggtaagatcatatatgatccct |
4240433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 367 - 457
Target Start/End: Complemental strand, 4240397 - 4240307
Alignment:
| Q |
367 |
atagcttattaccaatatattctccatactttgcttttttctctttttatcatgacacttatactaaactgtgtgtttgaatgaaagaaag |
457 |
Q |
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| T |
4240397 |
atagcttattaccaatatattctccatactttgcttttttctctttttatcatgacacttatactaaactgtgtgtttgaatgaaagaaag |
4240307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 468 - 520
Target Start/End: Complemental strand, 4240135 - 4240083
Alignment:
| Q |
468 |
tataccagaaaacaccaaaacagacactgacagagcaagctataatccatgtt |
520 |
Q |
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| T |
4240135 |
tataccagaaaacaccaaaacagacactgacagagcaagctataatccatgtt |
4240083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 110 - 305
Target Start/End: Complemental strand, 19939740 - 19939547
Alignment:
| Q |
110 |
tccactgttctttctctgtgtgttattataactcatcgatccatccatccatgactcctgtttctctgaatccaccaggtcctaattccttactacaagg |
209 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| |
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| T |
19939740 |
tccactgttctttct--gtgtgttattataactcatcgatccatccatccatgactcttgtttctctgaatccaccaggtcctaattcctaagtacaagg |
19939643 |
T |
|
| Q |
210 |
tcaaaaccaattcttcaatatttctcctgttgatcaggacactcctaccttctttaacttacttggagactttggagaaaactatgatcatcatca |
305 |
Q |
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| T |
19939642 |
tcaaaacaaattcttcaatatttctcctgttaatcaggacactcctacattctttaaattacttggagactttggagaaaatcatgatcatcatca |
19939547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 92 - 305
Target Start/End: Complemental strand, 19923880 - 19923663
Alignment:
| Q |
92 |
ccctatccctttgtactgtccactgttctttctctgtgtgttattataactcatcgatc----catccatccatgactcctgtttctctgaatccaccag |
187 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| |||||||||| |
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| T |
19923880 |
ccctatctctctgtactgtccactgttctttctctgtgtgttattataactcatcgatcgatccatccatccatgtcttctgtttctctaaatccaccag |
19923781 |
T |
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| Q |
188 |
gtcctaattccttactacaaggtcaaaaccaattcttcaatatttctcctgttgatcaggacactcctaccttctttaacttacttggagactttggaga |
287 |
Q |
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|| |||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19923780 |
atcttaattctttactacaaagtcaaaaccaattcttcaatatttctcctgttaataaggacactcctaccttctttaaattacttggagactttggaga |
19923681 |
T |
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| Q |
288 |
aaactatgatcatcatca |
305 |
Q |
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||| ||||||||||||| |
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| T |
19923680 |
aaatcatgatcatcatca |
19923663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 452
Target Start/End: Complemental strand, 19923531 - 19923489
Alignment:
| Q |
410 |
tttttatcatgacacttatactaaactgtgtgtttgaatgaaa |
452 |
Q |
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||||||| ||||||||| ||||||||||| ||||||||||||| |
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| T |
19923531 |
tttttatgatgacacttttactaaactgtttgtttgaatgaaa |
19923489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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