View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21124_high_3 (Length: 513)
Name: NF21124_high_3
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 117 - 495
Target Start/End: Complemental strand, 11966287 - 11965903
Alignment:
| Q |
117 |
tctatcttggaaatcaaaccataacacaaagaatctatcattatttacattatgtattagaattaccatttgcatagatcatattaaattattagtagct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
11966287 |
tctatcttggaaatcaaaccataacaca--gaatctatcattatttacattatgtattagaattaccatttgcgtagatcatattaaattatta-tagct |
11966191 |
T |
|
| Q |
217 |
tgtcactttataaacccatgatttagaattcataatttcacaaggaaaaaagagagaattca---------taatttcacaaggacccctaaaatttctt |
307 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||| ||||||||| |
|
|
| T |
11966190 |
tgtcactttattaacccatgatttagaattcataatttcacaaggaaaaaagagagattctagtagttagctaaattcacaaggacccct-aaatttctt |
11966092 |
T |
|
| Q |
308 |
ttatcagcggaaaaatacaaatagatataatggcgagattattgagaaatgttacaactcttaatagaattcataattgag-aaagnnnnnnnnnngtga |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
11966091 |
ttatcagcggaaaaatacaaatagatataatggcgagattattgagaaatgttacaactcttaatagaattcataattgagaaaaaaaaaaaaaaagtga |
11965992 |
T |
|
| Q |
407 |
aatgaaaatattatttatatgagagcattgttacatcaagatttatgtttccaattcggccaactaaaacctaattttacatctctaat |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11965991 |
aatgaaaatattatttatatgagagcattgttacatcaagatttatgtttccaattcggccaactaaaacctaattttacatctctaat |
11965903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 11966393 - 11966353
Alignment:
| Q |
11 |
cacagaacactaaacatcaaacgcaaactcatcacataaat |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11966393 |
cacagaacactaaacatcaaacgcaaactcatcacataaat |
11966353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 38503782 - 38503826
Alignment:
| Q |
403 |
gtgaaatgaaaatattatttat-atgagagcattgttacatcaag |
446 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
38503782 |
gtgaaatgaaaataatatttatcatgagagaattgttacatcaag |
38503826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University