View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21124_high_6 (Length: 353)
Name: NF21124_high_6
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 28461735 - 28462081
Alignment:
| Q |
1 |
atgcattatgaacactagaagtatagatagatattaaagcaaattaaattaaatataataagaaatgacagataacgactatattatgctttgttttatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28461735 |
atgcattatgaacactagaagtatagatagatattaaagcaaattaaattaaatataataagaaatgacagataacgactatattatgctttgttttatt |
28461834 |
T |
|
| Q |
101 |
gtcaaaaaagcaatatgcttctttagattattattttttccgcccacatacaatgctgaaaaccgtgaaatccttaactacttatatcacaataattgag |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28461835 |
gtcaaaaaagcaatattcttctttagattattattttttccgcccacatacaatgctgaaaaccgtgaaatccttaactacttatatcacaataattgag |
28461934 |
T |
|
| Q |
201 |
ttaggttgcaaatgcctaataggtgaatagcatgtaaaaaatgacaattat-------tggaatctaaacatgactcctttcaaggttttttatgtgaca |
293 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28461935 |
ttaggttgcaaatgactaataggtgaatagcatgtaaaaaatgacaattattggattctggaatctaaacatgactcctttcaaggttttttatgtgaca |
28462034 |
T |
|
| Q |
294 |
aagactgctttcaagttaaacaactaattttcacacatgtataaaat |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28462035 |
aagactgctttcaagttaaacaactaattttcacacatgtataaaat |
28462081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University