View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_high_9 (Length: 306)
Name: NF21124_high_9
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 1694635 - 1694919
Alignment:
| Q |
11 |
cagagattactccaataccattgctgatctgcaataatcagtaaaaatgtatattaataacatgggttaagtataaatcattcatccaatt--------- |
101 |
Q |
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| T |
1694635 |
cagagattactccaataccattactgatctgcaataatcagtaaaaatgtatattaataacatgggttaagtataaatctttaatccaattgaattacat |
1694734 |
T |
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| Q |
102 |
------attaactcacaagtcacaacaatactataggaatataaattaaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgt |
195 |
Q |
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| T |
1694735 |
acaattattaactcacaaatcacaacaatactataggaatataaatt---------accagaacataaatgtcaaaggggtggagcagagcatatgttgt |
1694825 |
T |
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| Q |
196 |
ccagcaaagtccattgaggaagttggtaagagagagccagaatggcatgtatttcacactcttggttcttataaccgttgcctgttcatcatat |
289 |
Q |
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| T |
1694826 |
ccagcaaagtccattgaggaagttggtaagagagagccagaatggcatgtatttcacactcttggttcttataaccgttgcctgttcatcatat |
1694919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 1684214 - 1684484
Alignment:
| Q |
11 |
cagagattactccaataccattgctgatctgcaataatcagtaaaaatgtatattaat-aacatgggttaagtataaatcattcatccaattattaactc |
109 |
Q |
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| T |
1684214 |
cagagattactccaataccattgctgatctgcagtagtcagtgaaagtgtatattaattaatatgggttaagtataaatcattcatccaattattaactc |
1684313 |
T |
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| Q |
110 |
acaagtcacaacaatactataggaatataaattaaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccat |
209 |
Q |
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| T |
1684314 |
acaagtcacaacaatactataggaatata---------aattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccat |
1684404 |
T |
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| Q |
210 |
tgaggaagttggtaagagagagccagaatggcatgtatttcacactcttggttcttataaccgttgcctgttcatcatat |
289 |
Q |
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| T |
1684405 |
tgaggaagttaaacacagagagccagaatggcatgtatttcacactcttagtcgttataacctttttctgttgatcatat |
1684484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 142 - 290
Target Start/End: Original strand, 1699864 - 1700012
Alignment:
| Q |
142 |
taaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagccagaatggc |
241 |
Q |
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| T |
1699864 |
taaattaattaccaagacataaatatccaatgggtggatgagagcatatgttgtccagcacaaaccattgaggaagttggttagagagagccaaaatggc |
1699963 |
T |
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| Q |
242 |
atgtatttcacactcttggttcttataaccgttgcctgttcatcatata |
290 |
Q |
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| T |
1699964 |
atgtatttcacactcttggtttttataaccttggcctgttcattatata |
1700012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 289
Target Start/End: Original strand, 1674181 - 1674322
Alignment:
| Q |
148 |
aattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagccagaatggcatgtat |
247 |
Q |
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| T |
1674181 |
aattaccaggagataaatgtcgaaggggttgatgagagcatatgttgtccaacacaatccattaagaaagatagccagagagggcaagaatggcatgtat |
1674280 |
T |
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| Q |
248 |
ttcacactcttggttcttataaccgttgcctgttcatcatat |
289 |
Q |
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| T |
1674281 |
ttcacactctttgtttttataacattttcctgttcattatat |
1674322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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