View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_low_1 (Length: 639)
Name: NF21124_low_1
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 19 - 639
Target Start/End: Original strand, 38326037 - 38326647
Alignment:
| Q |
19 |
atagatacagctttgaatgtgactggaaaaacaagagtttttctaactgaatcaaattgaataggatcgaataaagagctttttaatgtgaatgacttta |
118 |
Q |
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| T |
38326037 |
atagatacaactttgaatgtgactggaaaaacaagagtttttctaactgaatcaaattgaataggatcgaatcaagagctttttaatgtgaatgacttta |
38326136 |
T |
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| Q |
119 |
gaagtcctcccttaacctcataaattgataattgtagtatacacaactgaagcgtttagttttagggattgactaaactaaactaaacacagaactatat |
218 |
Q |
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| T |
38326137 |
gaagtcctcccttaacctcataaattgataattgtagtatacacaactgaagcgtttagttttagggattgactaaactaaactaaacacagaactatat |
38326236 |
T |
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| Q |
219 |
aatctctttcatattatatatgcataatgtatcatctagattatacaaggataatcagcagtagcacacattgtatcattgaacaccatgagtcatgacc |
318 |
Q |
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| T |
38326237 |
aatctctttcatattatatatgcataatgtatcatctatattatacaaggataatcagcagtag--cacattgtatcattgaacaccatgagtcatgacc |
38326334 |
T |
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| Q |
319 |
aagcaaaatatcttaggtgagcgtatcgttatagatttcgtgctgcaggtaaatgttttagctcgtgtagtcataaatatcttagatagtaaacatgcaa |
418 |
Q |
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| T |
38326335 |
aagcaaaatatcttaggtgagcgtatcgttatagatttcgtgctgcaggtaaatgttttagctcgtgtagtcataaatatcttagatagtaaacatgcaa |
38326434 |
T |
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| Q |
419 |
aatgatctggacttgttctgctaaattttatcaaaattgattgcattctaacttcttcacatacccaccacccttggtttactgtttaaaagaatgcaac |
518 |
Q |
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| T |
38326435 |
aatgatctggacttgttctgctaaattttatcaaaattgattgcattctaacttcttcacataccctctacccttggtttactgtttaaaagaatgcaa- |
38326533 |
T |
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| Q |
519 |
tagaggtctagagagatagtcacattaactagactattgttgtgtttgagaataaaattgaactagaccaaacaaaattgttatcgcagttcagaaacac |
618 |
Q |
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| T |
38326534 |
-------ctagagagatagtcacattaactagactattgttgtgtttgagaataaaattgaactagaccaaacaaaattgttatcgcagttcagaaacac |
38326626 |
T |
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| Q |
619 |
agaaccaagccgttactgatt |
639 |
Q |
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| T |
38326627 |
agaaccaagccgttactgatt |
38326647 |
T |
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