View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_low_11 (Length: 283)
Name: NF21124_low_11
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 9229086 - 9229205
Alignment:
| Q |
148 |
aaaaacgtgcattttagcctaaaattatacaatcaagagtatcaaatgcttctctgatatcaaccttgagagccaagttcccaccaaaattccttttatt |
247 |
Q |
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| T |
9229086 |
aaaaacgtgcattttagcctaaaaatatacaatcaagagtatcaaatgcttctctgatatcaaccttgagagccaagttcccaccaaaattctttttatc |
9229185 |
T |
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| Q |
248 |
aaagaagttgatggcctttg |
267 |
Q |
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| T |
9229186 |
aaagaagttgatggcctttg |
9229205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 9229043 - 9229072
Alignment:
| Q |
13 |
aatatttaaataatgaaataaacatgatca |
42 |
Q |
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| T |
9229043 |
aatatttaaataatgaaataaacatgatca |
9229072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 28714726 - 28714667
Alignment:
| Q |
177 |
caatcaagagtatcaaatgcttctctgatatcaaccttgagagccaagttcccaccaaaa |
236 |
Q |
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| T |
28714726 |
caatcaagagtgtcaaaagcttttgtgatatcaatcttgagagctaagttgccaccaaaa |
28714667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 16488358 - 16488299
Alignment:
| Q |
177 |
caatcaagagtatcaaatgcttctctgatatcaaccttgagagccaagttcccaccaaaa |
236 |
Q |
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||||||||||| ||||| |||| | ||||||||| ||||||||| ||||| ||||||||| |
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| T |
16488358 |
caatcaagagtgtcaaaagcttttgtgatatcaatcttgagagctaagttgccaccaaaa |
16488299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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