View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_low_12 (Length: 259)
Name: NF21124_low_12
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 39142870 - 39142612
Alignment:
| Q |
1 |
gaaacaaacaatgttgagaaacttgtctgcaacactagaatctaccaagagaaaaatcctaacttcttcaaaatgccgaatttaccctcctccttctccc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39142870 |
gaaactaacaatgttgagaaacttgtctgcaacactagaatctaccaagagaaaaatcctaacttcttcaaaatgccgaatttaccctcctccttctccc |
39142771 |
T |
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| Q |
101 |
tactccaccgctcccgtcgatgacgccccaccgaagcttctggtggttcagcctcgtctccgttccgaaaagctcttacaagccaaactcaacgaagcac |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39142770 |
tactccaccgctcccgtcgacgacgccccaccgaagcttctggtggttcagcctcgtctccgttccgaaaagctcttacaagccaaactcaacgaagcac |
39142671 |
T |
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| Q |
201 |
tgtgtctagccaattcacttgaagatcaacgtgatggttattttcacactgatttcttt |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39142670 |
tgtgtctagccaattcacttgaagatcaacgtgatggttattttcacactgatttcttt |
39142612 |
T |
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