View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_low_15 (Length: 249)
Name: NF21124_low_15
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_low_15 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 17646855 - 17646634
Alignment:
| Q |
28 |
tggaaaggcccaactattaataacacaccaacaaaaactttataaatacatgctttagtgagggagacatattaaaaataaaattgagaggagagttcag |
127 |
Q |
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| T |
17646855 |
tggaaaggcccaattattaataacacaccaacaaaaactttataaatacatgctttagtgagggagacatattaaaaataaaatcgagaggagagttcag |
17646756 |
T |
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| Q |
128 |
ggaattatatttgtcacaagtcatattttactggtttcaaacatagaatataaatcaaaccaaaactagactcataaatgtaatattgatatacaaaata |
227 |
Q |
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| T |
17646755 |
ggaattatatttgtcacaagtcatattttagtggtttcaaacatagaatataaatcaaaccaaaactagactcataaatgtaatattgatatacaaaata |
17646656 |
T |
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| Q |
228 |
agcaaatttaattgatatctcg |
249 |
Q |
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| T |
17646655 |
agcaaatttaattgatatctcg |
17646634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 17606718 - 17606623
Alignment:
| Q |
97 |
tattaaaaataaaattgagaggagagttcagggaattatatttgtcacaagtcatattttactggtttcaaacatagaatataaatcaaaccaaaacta |
195 |
Q |
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| T |
17606718 |
tattaaaagtaaaattgaaatgggagttcagggaattacattac-cacaagtcatgtt--actggtttcaaacatagaatagaaatcaaacctaaacta |
17606623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 17663057 - 17663096
Alignment:
| Q |
207 |
gtaatattgatatacaaaataagcaaatttaattgatatc |
246 |
Q |
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| T |
17663057 |
gtaatattgatataacaaataagcaaatttaattgatatc |
17663096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 17606594 - 17606550
Alignment:
| Q |
203 |
aaatgtaatattgatatacaaaataagcaaatttaattgatatct |
247 |
Q |
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| T |
17606594 |
aaatgtaatattagtatagaatataagcaaatttaattgatatct |
17606550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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