View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_low_17 (Length: 236)
Name: NF21124_low_17
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4039474 - 4039694
Alignment:
| Q |
1 |
ttatgaagagaatgaaatatgagagaaaattttcagcttctctttatgcattcaatggaatacctgaatgcttgaaattgaaacttgaatctggaaacaa |
100 |
Q |
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| T |
4039474 |
ttatgaagagaatgaaatatgagagaaaattttcagcttctctttatgcattcaatggaatacctgaatgcttgaaattgaaacttgaatctggaaacaa |
4039573 |
T |
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| Q |
101 |
taatggaagaggaatttctgatcaattgaacaatctcaaagaagcatgtaacaaaaataaacttgagaagaagaagaagatggtggatgagaaaaatgaa |
200 |
Q |
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| T |
4039574 |
taatggaagaggaatttctgatcaattgaacaatctcaaagaagcatgtaacaaaaataaacttgagaagaagaagaagatggtggatgagaaaaatgaa |
4039673 |
T |
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| Q |
201 |
gaaaataatcaaacttcaact |
221 |
Q |
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| T |
4039674 |
gaaaataatcaaacttcaact |
4039694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 3161283 - 3161372
Alignment:
| Q |
2 |
tatgaagagaatgaaatatgagagaaaattttcagcttctctttatgcattcaatggaatacctgaatgcttgaaattgaaacttgaatc |
91 |
Q |
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| T |
3161283 |
tatgaagagaatgaaatatgagaggaaattctcagcttctctttatgctttcaatggaatacctgagtgcttgaagttgaaacttgaatc |
3161372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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