View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_low_18 (Length: 231)
Name: NF21124_low_18
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 39142397 - 39142505
Alignment:
| Q |
10 |
aagttaatacctttgattctacagcatttaaatgacacttgatagtatcaactgttccaggaccaaaataggtatctgcaaaacatgaaatatccaaatt |
109 |
Q |
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| T |
39142397 |
aagttaatacctttgattctacagcatttaaatgacacttgatagtatcaactgttccaggaccaaaataagtatctgcaaaacatgaaatatccaaatt |
39142496 |
T |
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| Q |
110 |
gggttacat |
118 |
Q |
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| T |
39142497 |
gggttacat |
39142505 |
T |
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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 39142526 - 39142611
Alignment:
| Q |
146 |
cacaagttaaaaaccgaacctgcacgagctttatgtcctttaagagaaggattctgaacaataacatgcggtggtagtggcaaatc |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39142526 |
cacaagttaaaaaccgaacctgcacgagctttatgtcctttaagagaaggattctgaacaataacatgcggtggtagtggcaaatc |
39142611 |
T |
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