View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21124_low_3 (Length: 529)

Name: NF21124_low_3
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21124_low_3
NF21124_low_3
[»] scaffold0029 (3 HSPs)
scaffold0029 (19-342)||(70885-71207)
scaffold0029 (402-483)||(71738-71819)
scaffold0029 (402-483)||(70738-70820)
[»] chr1 (12 HSPs)
chr1 (19-342)||(2939324-2939646)
chr1 (19-342)||(33332389-33332717)
chr1 (21-342)||(46014910-46015231)
chr1 (402-511)||(2939699-2939808)
chr1 (402-511)||(33332217-33332327)
chr1 (402-479)||(46014773-46014850)
chr1 (402-483)||(46015765-46015847)
chr1 (402-484)||(33333320-33333403)
chr1 (414-472)||(2938641-2938699)
chr1 (409-479)||(36143051-36143121)
chr1 (414-478)||(47113035-47113099)
chr1 (414-479)||(35123118-35123183)
[»] chr7 (7 HSPs)
chr7 (19-342)||(45087777-45088099)
chr7 (402-511)||(45087105-45087215)
chr7 (402-483)||(45088159-45088242)
chr7 (404-483)||(45596938-45597017)
chr7 (414-479)||(30766605-30766670)
chr7 (405-482)||(40739961-40740038)
chr7 (409-479)||(17279358-17279428)
[»] chr2 (13 HSPs)
chr2 (15-317)||(7190701-7191001)
chr2 (21-342)||(13809632-13809956)
chr2 (402-483)||(13809492-13809573)
chr2 (402-483)||(13810488-13810570)
chr2 (402-479)||(3603576-3603653)
chr2 (414-479)||(20686594-20686659)
chr2 (444-483)||(7184950-7184989)
chr2 (402-448)||(7190094-7190141)
chr2 (409-479)||(8029038-8029108)
chr2 (409-479)||(28190401-28190471)
chr2 (414-479)||(19297599-19297664)
chr2 (414-479)||(40468118-40468183)
chr2 (415-478)||(44915989-44916052)
[»] chr6 (10 HSPs)
chr6 (19-342)||(17971000-17971319)
chr6 (438-511)||(29744821-29744894)
chr6 (438-511)||(29751085-29751158)
chr6 (403-482)||(14907091-14907170)
chr6 (409-479)||(27129795-27129865)
chr6 (404-479)||(17970872-17970947)
chr6 (414-479)||(20745657-20745722)
chr6 (443-483)||(14403756-14403796)
chr6 (414-478)||(17971768-17971832)
chr6 (409-479)||(12260518-12260588)
[»] chr8 (10 HSPs)
chr8 (19-342)||(9311703-9312026)
chr8 (19-342)||(14817372-14817696)
chr8 (19-342)||(14828043-14828367)
chr8 (402-479)||(9311093-9311171)
chr8 (402-483)||(9312085-9312166)
chr8 (402-479)||(14816641-14816719)
chr8 (402-479)||(14829021-14829099)
chr8 (409-479)||(13463064-13463134)
chr8 (407-458)||(11198448-11198499)
chr8 (402-468)||(15741502-15741568)
[»] chr4 (10 HSPs)
chr4 (19-342)||(11039259-11039582)
chr4 (402-483)||(11039641-11039722)
chr4 (402-479)||(11038649-11038727)
chr4 (404-483)||(51645883-51645962)
chr4 (404-482)||(51644805-51644883)
chr4 (409-479)||(9086365-9086435)
chr4 (404-483)||(36219474-36219553)
chr4 (409-479)||(40681417-40681487)
chr4 (43-100)||(41550247-41550304)
chr4 (409-445)||(2946108-2946144)
[»] chr3 (10 HSPs)
chr3 (31-342)||(39991718-39992028)
chr3 (402-482)||(39991573-39991653)
chr3 (438-511)||(27688526-27688599)
chr3 (438-511)||(27695520-27695593)
chr3 (409-479)||(32304304-32304374)
chr3 (438-479)||(20185758-20185799)
chr3 (402-481)||(39992402-39992482)
chr3 (433-478)||(5348837-5348881)
chr3 (409-479)||(34819536-34819606)
chr3 (407-468)||(2829651-2829711)
[»] chr5 (5 HSPs)
chr5 (19-275)||(19718407-19718663)
chr5 (256-302)||(37967468-37967514)
chr5 (402-482)||(19718796-19718879)
chr5 (294-342)||(19718689-19718737)
chr5 (414-482)||(37966883-37966951)
[»] scaffold0394 (1 HSPs)
scaffold0394 (438-511)||(14311-14384)


Alignment Details
Target: scaffold0029 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 71207 - 70885
Alignment:
Q  19 tgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgttttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| ||||||||||||||||||    
T  71207 tgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtctagatacagtaaaaattgccacaagaagaatattgtttatgttgttttc 71108  T
Q  119 tgggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggagcnnnnnnnnctgagaag 218  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||    
T  71107 taggattgtgtttgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggagcataaaaaa-agagaag 71009  T
Q  219 aaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatgtgag 318  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  71008 aaaggggaagagatggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatgtgag 70909  T
Q  319 tcaattctggatttttctcatgag 342  Q
    |||||||| |||||||||||||||    
T  70908 tcaattctagatttttctcatgag 70885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 71738 - 71819
Alignment:
Q  402 taaaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  71738 taaaccctaacgttttttgaataaaattaacggaaaggaccaaaacatgtaacggagcaaaagttaaaataccacaacggac 71819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 70820 - 70738
Alignment:
Q  402 taaaccctaacgtttttt-gaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  70820 taaaccctaacgtttttttgaataaaattaacggaaaggaccaaaacatgtaacggagtaaaagttaaaataccaaaatggac 70738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 2939324 - 2939646
Alignment:
Q  19 tgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgttttc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||||||||||||||||||||||||||    
T  2939324 tgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaaatccagatacagtcaaaattgccacaagaagaaaattgtttatgttgttttc 2939423  T
Q  119 tgggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggagcnnnnnnnnctgagaag 218  Q
    |||| |||||||  |||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| ||||||||         |||||||    
T  2939424 tgggtttgtgtttaaaacgaagatgatgataattttgtgtttggtatagagtgaaatagaggaatataggtatcagattggagccaaaaaaaatgagaag 2939523  T
Q  219 aaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatgtgag 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2939524 aaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagtta-ggtttgaataacattcatgtgag 2939622  T
Q  319 tcaattctggatttttctcatgag 342  Q
    ||||||||||||||||||||||||    
T  2939623 tcaattctggatttttctcatgag 2939646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 33332717 - 33332389
Alignment:
Q  19 tgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgttttc 118  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || ||||||||||||||| ||| ||||||||||||||||||||    
T  33332717 tgaacatgttgaagtattgtcccttgtgaacaaacatctgaaacaaaaatccagatacagtaaaaattgccacaacaaggaaattgtttatgttgttttc 33332618  T
Q  119 tgggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggagc------nnnnnnnnct 212  Q
    | |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||                    
T  33332617 taggattgtgtttgacacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgagtattagattggagcaaaaaaaaaaaaaaaa 33332518  T
Q  213 gagaagaaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattca 312  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||    
T  33332517 gagaa-aaaggggaagagagggtttgaatttgagttaaccctttcacaacaattaaatgaatttaggattaaaataaagttagggtttgaataacattca 33332419  T
Q  313 tgtgagtcaattctggatttttctcatgag 342  Q
    ||||||||||||||||||||||||||||||    
T  33332418 tgtgagtcaattctggatttttctcatgag 33332389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 46015231 - 46014910
Alignment:
Q  21 aacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttg-ttttct 119  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |||||     
T  46015231 aacatgttgaagtattgtcccatatgaacaaacatctgaaacaaaaatccagatacaataaaaattgccccaagaagaaaattgtttatgttgtttttca 46015132  T
Q  120 gggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggag-cnnnnnnnnctgagaag 218  Q
    ||||||||||| |||| |||||||||  ||||||||||||||||||||||||||||| ||||  |||||||||| |||||||           ||||| |    
T  46015131 gggattgtgtttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatatagga--atgggtatcagattggagaaaaaaaaagatgagatg 46015034  T
Q  219 aaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatgtgag 318  Q
    |||||||||||||| |||||||||||| | |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  46015033 aaaggggaagagagagtttgaatttgaatcaaccctttcacaacaattaaaagaatttggaagtaaaataaagttagggtttgaataacattcatgtgaa 46014934  T
Q  319 tcaattctggatttttctcatgag 342  Q
    |||||||||| |||||||||||||    
T  46014933 tcaattctgggtttttctcatgag 46014910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 402 - 511
Target Start/End: Original strand, 2939699 - 2939808
Alignment:
Q  402 taaaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatggga 501  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||       |||||| |||    
T  2939699 taaaccctaacgttttttgaataaaattaacggaaatgaccaaaacaagtaacggagcaaaagttaaaataccaaaacagacatttttttagttatagga 2939798  T
Q  502 ccaaaccgat 511  Q
    ||||||||||    
T  2939799 ccaaaccgat 2939808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 402 - 511
Target Start/End: Complemental strand, 33332327 - 33332217
Alignment:
Q  402 taaaccctaacgtttttt-gaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatggg 500  Q
    |||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||||       |||||||||    
T  33332327 taaaccctaacgtttttttgaataaaattaacggaaatgaccaaaacaagtaacggagcaaaagttaaaatatcaaaacggacatttttttagttatggg 33332228  T
Q  501 accaaaccgat 511  Q
    |||||||||||    
T  33332227 accaaaccgat 33332217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 46014850 - 46014773
Alignment:
Q  402 taaaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||||||| || ||||||||||||||||||||||||    
T  46014850 taaaccctaacgttttttgaataatattaacggaaaggactaaaacatgtgacagagcaaaagttaaaataccaaaac 46014773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 46015765 - 46015847
Alignment:
Q  402 taaaccctaacgtttt-ttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    |||||||||||||||| |||||||||||||| ||||||||| |||||| | |||||| |||||||||||||||||||||||||    
T  46015765 taaaccctaacgtttttttgaataaaattaacggaaaggactaaaacaagaaacggaacaaaagttaaaataccaaaacggac 46015847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 402 - 484
Target Start/End: Original strand, 33333320 - 33333403
Alignment:
Q  402 taaaccctaacgttttttg-aataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggaca 484  Q
    |||||| |||||||||||  ||||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||    
T  33333320 taaaccttaacgttttttttaataaaattaacggaaatgaccaaaagatgtaacggagcaaaaattaaaataccaaaacggaca 33333403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 472
Target Start/End: Complemental strand, 2938699 - 2938641
Alignment:
Q  414 ttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaata 472  Q
    |||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||    
T  2938699 ttttttgaataaaattaacggaaatgatcaaaacatgtaacggagcaaaaattaaaata 2938641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 36143051 - 36143121
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    ||||||||||| | ||||| ||| |||| |||||||||||||||||||||  |||| ||||||||||||||    
T  36143051 taacgtttttttattaaaactaacggaatggaccaaaacatgtaacggagataaagataaaataccaaaac 36143121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 478
Target Start/End: Original strand, 47113035 - 47113099
Alignment:
Q  414 ttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaa 478  Q
    |||||| | ||||||||| |||| |||||||||||||||||||||  |||| |||| ||||||||    
T  47113035 tttttttattaaaattaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaa 47113099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 479
Target Start/End: Original strand, 35123118 - 35123183
Alignment:
Q  414 ttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||| | ||||| ||| |||| |||||||||||||||||| ||  |||| ||||||||||||||    
T  35123118 tttttttattaaaactaacggaagggaccaaaacatgtaacgaagataaagataaaataccaaaac 35123183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 45087777 - 45088099
Alignment:
Q  19 tgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgttttc 118  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || ||||||||||||||| ||| ||||||||||||||||||||    
T  45087777 tgaacatgttgaagtattgtcccttgtgaacaaacatctgaaacaaaaatccagatacagtaaaaattgccacaacaaggaaattgtttatgttgttttc 45087876  T
Q  119 tgggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggagcnnnnnnnnctgagaag 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||         ||||||     
T  45087877 tgggattgtgtttgaaacgaagatgatgataattttgtgtttggcaaagagtgaaatagaggaatatgggtattagattggagcaaaaaaaaatgagaa- 45087975  T
Q  219 aaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatgtgag 318  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45087976 aaaggggaagagagggtttggatttgagttaaccctttcacaacaattaaatgaatttgggagaaaaataaagttagggtttgaataacattcatgtgag 45088075  T
Q  319 tcaattctggatttttctcatgag 342  Q
    ||||||||| ||||||||||||||    
T  45088076 tcaattctgaatttttctcatgag 45088099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 402 - 511
Target Start/End: Complemental strand, 45087215 - 45087105
Alignment:
Q  402 taaaccctaacgtttttt-gaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatggg 500  Q
    |||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  45087215 taaatcctaacgtttttttgaataaaattaacggaaaagaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacctttttttagttatggg 45087116  T
Q  501 accaaaccgat 511  Q
    |||||||||||    
T  45087115 accaaaccgat 45087105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 45088159 - 45088242
Alignment:
Q  402 taaaccctaacgtttt--ttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  45088159 taaaccctaacgttttttttgaataaaattaacggaaaggaccaaaacaagtaactgagcaaaagttaaaataccaaaacggac 45088242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 483
Target Start/End: Complemental strand, 45597017 - 45596938
Alignment:
Q  404 aaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    |||||||| ||||| ||||| ||| | | ||||||||||||||||||||| ||||  ||| |||||||||||||||||||    
T  45597017 aaccctaatgttttatgaattaaactgacggaaaggaccaaaacatgtaatggagataaacttaaaataccaaaacggac 45596938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 479
Target Start/End: Original strand, 30766605 - 30766670
Alignment:
Q  414 ttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||||| ||||| ||| |||| |||||||||||||||||||||  |||| |||| |||||||||    
T  30766605 ttttttgattaaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaac 30766670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 482
Target Start/End: Original strand, 40739961 - 40740038
Alignment:
Q  405 accctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacgga 482  Q
    ||||||||||||||  | |||| |||| | |||||||||||| || ||||||||  ||| ||||||||||||||||||    
T  40739961 accctaacgtttttgaattaaatttaacgaaaaggaccaaaatatataacggagataaacttaaaataccaaaacgga 40740038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 17279358 - 17279428
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    ||||||||||||| ||||| ||| ||||| |||||||||||||||  |||  |||| |||| |||||||||    
T  17279358 taacgttttttgattaaaactaacggaaatgaccaaaacatgtaatagagataaagataaagtaccaaaac 17279428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 7190701 - 7191001
Alignment:
Q  15 gagatgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||| ||||||||||||||||||||||||    
T  7190701 gagatgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaaattcagatacagtaaaaattgccgcaagaagaaaattgtttatgttgt 7190800  T
Q  115 tttctgggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggagcnnnnnnnnctga 214  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||         |||    
T  7190801 tttctgggattgtgtttgaaacgaagatgatgataattttgtgtttggtagagagtgaaatagaggaatatggatatcagattggagcaaaaaaaa-tga 7190899  T
Q  215 gaagaaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatg 314  Q
    ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7190900 gaagaaa-gggaagagagagtttgaatttgagttaaccctttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatg 7190998  T
Q  315 tga 317  Q
    |||    
T  7190999 tga 7191001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 13809956 - 13809632
Alignment:
Q  21 aacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgttttctg 120  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  13809956 aacatgttgaagtattgtcccatatgaacaaacatctgaaacaaaaatccagatacaataaaaattgccctaagaagaaaattgtttatgttgttttctg 13809857  T
Q  121 ggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggag------cnnnnnnnnctga 214  Q
    |||||||||| |||| |||||||||  ||||||||||||||||||||||||||||||||||  |||||||||| |||||||                |||    
T  13809856 ggattgtgtttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatagagga--atgggtatcagattggagaaagaaaaaaaaaagatga 13809759  T
Q  215 gaagaaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatg 314  Q
     | |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13809758 aatgaaaggggaagagagggtttgaatttgaattaaccctttcacaacaattaaaagaatttgggagt-aaataaagttagggtttgaataacattcatg 13809660  T
Q  315 tgagtcaattctggatttttctcatgag 342  Q
    ||| |||||||||| |||||||||||||    
T  13809659 tgaatcaattctgggtttttctcatgag 13809632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 13809573 - 13809492
Alignment:
Q  402 taaaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||| ||||||||||||||| |||||||||    
T  13809573 taaaccctaacgttttttgaataatattaacggaaaggactaaaacatgtgacggaacaaaagttaaaatactaaaacggac 13809492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 13810488 - 13810570
Alignment:
Q  402 taaaccctaacgtttt-ttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    |||||||||||||||| ||||||||||||||  |||| |||||||||| | ||| || ||||||||||||||||||| |||||    
T  13810488 taaaccctaacgtttttttgaataaaattaacagaaatgaccaaaacaagaaacagaacaaaagttaaaataccaaatcggac 13810570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 3603653 - 3603576
Alignment:
Q  402 taaaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||||||||||||||  | |||| |||| ||||||||| |||| ||||||| |||  ||| |||||||||||||||    
T  3603653 taaaccctaacgtttttgaattaaatttaacggaaaggactaaaatatgtaacagagataaacttaaaataccaaaac 3603576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 479
Target Start/End: Original strand, 20686594 - 20686659
Alignment:
Q  414 ttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||||| ||||| ||| |||| |||||||||||||||||||||  |||| |||| |||||||||    
T  20686594 ttttttgattaaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaac 20686659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 7184989 - 7184950
Alignment:
Q  444 aaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  7184989 aaacaagtaacggagtaaaagttaaaataccaaaacggac 7184950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 7190141 - 7190094
Alignment:
Q  402 taaaccctaacgtttttt-gaataaaattaatggaaaggaccaaaaca 448  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  7190141 taaacgctaacgtttttttgaataaaattaacggaaaggaccaaaaca 7190094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 479
Target Start/End: Complemental strand, 8029108 - 8029038
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    ||||||||||||| ||||| ||| |||| || ||||||||| ||||||||  |||| |||| |||||||||    
T  8029108 taacgttttttgattaaaactaacggaacgggccaaaacatctaacggagataaagataaagtaccaaaac 8029038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 28190401 - 28190471
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||| |||||| | ||||| ||| |||| |||||||||||||||||||||  |||| |||| |||||||||    
T  28190401 taacatttttttattaaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaac 28190471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 479
Target Start/End: Complemental strand, 19297664 - 19297599
Alignment:
Q  414 ttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||||| ||||||||| |||| ||||||||||||||||| |||  |||  |||| |||||||||    
T  19297664 ttttttgattaaaattaaaggaagggaccaaaacatgtaacagagataaaaataaagtaccaaaac 19297599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 479
Target Start/End: Complemental strand, 40468183 - 40468118
Alignment:
Q  414 ttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||||| ||||| ||| |||| ||||||||||||||| |||||  |||| |||| |||||||||    
T  40468183 ttttttgattaaaactaacggaagggaccaaaacatgtatcggagataaagataaagtaccaaaac 40468118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 478
Target Start/End: Original strand, 44915989 - 44916052
Alignment:
Q  415 tttttgaat-aaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaa 478  Q
    ||||||||| |||| ||| |||||||||||||| ||||||||||| | ||||||| |||||||||    
T  44915989 tttttgaattaaaactaacggaaaggaccaaaatatgtaacggag-agaagttaagataccaaaa 44916052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 17971319 - 17971000
Alignment:
Q  19 tgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgttttc 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||||||||||    
T  17971319 tgaacatgttaaagtattgtcccttatgaacaaacatctgaaacaaaaatccagatacagtaaaaattgccacaagaagaaaatcgtttatgttgttttc 17971220  T
Q  119 tgggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggagcnnnnnnnnctgagaag 218  Q
    ||||||| | ||  ||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||          ||||||     
T  17971219 tgggatttttttttaaacgaagatgatgataattttgtgtttggcagagggtgaaatagagga--atgggtatcagattggagaaaaaaaaaatgagaac 17971122  T
Q  219 aaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatgtgag 318  Q
    |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||||     
T  17971121 aaaggggaagagagggtttgaatttgggttaaccctttcacaaaaattaaaagaatttgggagtaaaacaaagttagggtttgaataac-ttgatgtgaa 17971023  T
Q  319 tcaattctggatttttctcatgag 342  Q
    ||||||||||  ||||||||||||    
T  17971022 tcaattctgg-gttttctcatgag 17971000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 511
Target Start/End: Complemental strand, 29744894 - 29744821
Alignment:
Q  438 ggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaccgat 511  Q
    |||||||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||||||||    
T  29744894 ggaccaaaacatgtaacggaacaaaagttaaaataccaaaacggacttttttttagttatgggaccaaaccgat 29744821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 511
Target Start/End: Original strand, 29751085 - 29751158
Alignment:
Q  438 ggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaccgat 511  Q
    |||||||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||||||||    
T  29751085 ggaccaaaacatgtaacggaacaaaagttaaaataccaaaacggacttttttttagttatgggaccaaaccgat 29751158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 482
Target Start/End: Complemental strand, 14907170 - 14907091
Alignment:
Q  403 aaaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacgga 482  Q
    ||||||||||  ||||| ||||||||||| ||||| || |||||| ||||||||||  |||||| |||||||||||||||    
T  14907170 aaaccctaactgttttttaataaaattaacggaaatgatcaaaacgtgtaacggagataaagtttaaataccaaaacgga 14907091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 27129795 - 27129865
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||||||  |||| |||| || ||||||    
T  27129795 taacgttttttgattaaaactaatggaagggaccaaaacatgtaacggagataaagataaagtatcaaaac 27129865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 479
Target Start/End: Complemental strand, 17970947 - 17970872
Alignment:
Q  404 aaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||||||||||||||||||||||  | ||||| ||||||||  || ||| ||| |||| |||||||||||||||    
T  17970947 aaccctaacgttttttgaataaaatatacggaaaagaccaaaatgtgaaacagagaaaaacttaaaataccaaaac 17970872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 479
Target Start/End: Complemental strand, 20745722 - 20745657
Alignment:
Q  414 ttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||||| ||||| |||||||| ||||||| |||||||||||||  |||| |||| |||||||||    
T  20745722 ttttttgattaaaactaatggaagggaccaacacatgtaacggagataaagataaagtaccaaaac 20745657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 14403796 - 14403756
Alignment:
Q  443 aaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  14403796 aaaacatgtaacggcgcaaaagttaaaataccaaaatggac 14403756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 478
Target Start/End: Original strand, 17971768 - 17971832
Alignment:
Q  414 ttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaa 478  Q
    ||||| |||||||||||| ||||||||||||||  || |||||||  ||| ||||||||||||||    
T  17971768 tttttggaataaaattaacggaaaggaccaaaatgtgcaacggagataaacttaaaataccaaaa 17971832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 479
Target Start/End: Complemental strand, 12260588 - 12260518
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    ||||||||||| | ||||| ||| |||| ||||||||||||||||| |||  |||| |||| |||||||||    
T  12260588 taacgtttttttattaaaactaacggaagggaccaaaacatgtaacagagataaagataaagtaccaaaac 12260518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-101; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 9311703 - 9312026
Alignment:
Q  19 tgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgttttc 118  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||     
T  9311703 tgaacatgttgaagtattatcccatatgaacaaacatctgaaacaaaaatccagatacaataaaaattgccccaagaagaaaattgtttatgttgttttt 9311802  T
Q  119 tgggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggag--cnnnnnnnnctgaga 216  Q
    |||||||||||| |||| |||| ||||  ||||||||||||||||||||||||||||||||||  ||| |||||| | |||||            |||||    
T  9311803 tgggattgtgtttgaaaagaaggtgattgtaattttgtgtttggcagagagtgaaatagagga--atgagtatcagaatggagaaaaaaaaaagatgaga 9311900  T
Q  217 agaaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatgtg 316  Q
     |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9311901 tgaaaggggaagagagggtttgaatttgaattaaccctttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatgtg 9312000  T
Q  317 agtcaattctggatttttctcatgag 342  Q
    | | |||||| | |||||||||||||    
T  9312001 aatgaattctaggtttttctcatgag 9312026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 14817372 - 14817696
Alignment:
Q  19 tgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgttttc 118  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||| | ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  14817372 tgaacatgttgaagtattgtcccatatgaacaaacatcttaaacaaaaattcagatacaataaaaatttccccaagaagaaaattgtttatgttgttttc 14817471  T
Q  119 tgggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattgg----agcnnnnnnnnctga 214  Q
    ||||||| |||| |||| |||||||||  ||||||||||||||||||||||||||||||||||  |||||||||| |||||    ||          |||    
T  14817472 tgggattatgtttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatagagga--atgggtatcagattggagaaagaaaaaaaagatga 14817569  T
Q  215 gaagaaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatg 314  Q
     | |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  14817570 aatgaaaggggaagagagggtttgaatttgaattaaccctttcacaacaattaaaagaatttgagagtaaaataaa-ttagggtttgaataacattcatg 14817668  T
Q  315 tgagtcaattctggatttttctcatgag 342  Q
    ||| |||||||||| |||||||||||||    
T  14817669 tgaatcaattctgggtttttctcatgag 14817696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 14828367 - 14828043
Alignment:
Q  19 tgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgttttc 118  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||| | ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  14828367 tgaacatgttgaagtattgtcccatatgaacaaacatcttaaacaaaaattcagatacaataaaaatttccccaagaagaaaattgtttatgttgttttc 14828268  T
Q  119 tgggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattgg----agcnnnnnnnnctga 214  Q
    ||||||| |||| |||| |||||||||  ||||||||||||||||||||||||||||||||||  |||||||||| |||||    ||          |||    
T  14828267 tgggattatgtttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatagagga--atgggtatcagattggagaaagaaaaaaaagatga 14828170  T
Q  215 gaagaaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatg 314  Q
     | |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  14828169 aatgaaaggggaagagagggtttgaatttgaattaaccctttcacaacaattaaaagaatttgagagtaaaataaa-ttagggtttgaataacattcatg 14828071  T
Q  315 tgagtcaattctggatttttctcatgag 342  Q
    ||| |||||||||| |||||||||||||    
T  14828070 tgaatcaattctgggtttttctcatgag 14828043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 9311171 - 9311093
Alignment:
Q  402 taaaccctaacgtttttt-gaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||| | |||||| |||||||||||||||||||||    
T  9311171 taaaccctaacgtttttttgaataaaattaacggaaaggaccaaaacaagaaacggaacaaaagttaaaataccaaaac 9311093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 9312085 - 9312166
Alignment:
Q  402 taaaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    ||||||||||||||| |||||||| |||||  |||||||| ||||||||| || |||||||| |||||||||||||||||||    
T  9312085 taaaccctaacgtttgttgaataatattaacagaaaggactaaaacatgtgacagagcaaaaattaaaataccaaaacggac 9312166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 14816719 - 14816641
Alignment:
Q  402 taaaccctaacgtttttt-gaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||| ||||||||||| |||||||||||| |||||| ||||||||| | |||||| |||||||||||||||||||||    
T  14816719 taaaccttaacgtttttttgaataaaattaacggaaagaaccaaaacaagaaacggaacaaaagttaaaataccaaaac 14816641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 14829021 - 14829099
Alignment:
Q  402 taaaccctaacgtttt-ttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||| ||||||||| |||||||||||||| |||||| ||||||||| | |||||| |||||||||||||||||||||    
T  14829021 taaaccttaacgtttttttgaataaaattaacggaaagaaccaaaacaagaaacggaacaaaagttaaaataccaaaac 14829099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 13463064 - 13463134
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    ||||||||||||| ||||| ||| |||| |||||||||||||||||||||  |||| |||| |||||||||    
T  13463064 taacgttttttgattaaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaac 13463134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 458
Target Start/End: Original strand, 11198448 - 11198499
Alignment:
Q  407 cctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggag 458  Q
    ||||||||||||| | ||||| ||||||||||||||||||  ||||||||||    
T  11198448 cctaacgttttttaattaaaactaatggaaaggaccaaaatgtgtaacggag 11198499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 468
Target Start/End: Original strand, 15741502 - 15741568
Alignment:
Q  402 taaaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaa 468  Q
    |||||||||||||||||| | |||| |||| ||||||||||||||  | ||||||||  ||||||||    
T  15741502 taaaccctaacgttttttaattaaatttaacggaaaggaccaaaatgtataacggagagaaagttaa 15741568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 11039259 - 11039582
Alignment:
Q  19 tgaacatgttgaagtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgttttc 118  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||||| |||||||||||||     
T  11039259 tgaacatgttgaagtattgtgccatatgaacaaacatctgaaacaaaaatccatatacaataaaaattgccccaagaagaaaattatttatgttgttttt 11039358  T
Q  119 tgggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggag--cnnnnnnnnctgaga 216  Q
    |||||||||||| |||| |||||||||  ||||||||||||||||||||||||||||||||||  ||| |||| | |||||||            |||||    
T  11039359 tgggattgtgtttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatagagga--atgagtattagattggagaaaaaaaaaagatgaga 11039456  T
Q  217 agaaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatgtg 316  Q
     |||||| ||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11039457 tgaaaggagaagagagggtttgaatttgaattaaccctttcacaacaattaaaacaatttgggagtaaaataaagttagggtttgaataacattcatgtg 11039556  T
Q  317 agtcaattctggatttttctcatgag 342  Q
    | ||||||||||  ||||||||||||    
T  11039557 aatcaattctgggattttctcatgag 11039582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 11039641 - 11039722
Alignment:
Q  402 taaaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    |||||||||||||||||||||||| ||||| ||||| ||| ||||||||| |||||||||||||||||||||||||| ||||    
T  11039641 taaaccctaacgttttttgaataatattaacggaaatgactaaaacatgtgacggagcaaaagttaaaataccaaaatggac 11039722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 11038727 - 11038649
Alignment:
Q  402 taaaccctaacgtttttt-gaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||| | ||| || |||||||||||||||||||||    
T  11038727 taaaccctaacgtttttttgaataaaattaacggaaaggaccaaaacaagaaacagaacaaaagttaaaataccaaaac 11038649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 404 - 483
Target Start/End: Original strand, 51645883 - 51645962
Alignment:
Q  404 aaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    |||||||| ||||| ||||| ||| | | ||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  51645883 aaccctaaagttttatgaattaaactgacggaaaggaccaaaacatgtaacggagataaacttaaaataccaaaacggac 51645962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 482
Target Start/End: Complemental strand, 51644883 - 51644805
Alignment:
Q  404 aaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacgga 482  Q
    |||||||||||||| ||||| ||| | | ||||||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  51644883 aaccctaacgttttatgaattaaactgacggaaaggaccaaaacatgtaacgaagataaacttaaaataccaaaacgga 51644805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 409 - 479
Target Start/End: Complemental strand, 9086435 - 9086365
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    ||||||||||||| ||||| ||| |||| |||||||||||||||||||||  |||| |||| |||||||||    
T  9086435 taacgttttttgattaaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaac 9086365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 483
Target Start/End: Complemental strand, 36219553 - 36219474
Alignment:
Q  404 aaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggac 483  Q
    ||||||||| |||| ||||| ||| | | ||||| |||||||| |||||||||||  ||| ||||||||| |||||||||    
T  36219553 aaccctaacattttatgaattaaactgacggaaatgaccaaaatatgtaacggagataaacttaaaatactaaaacggac 36219474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 40681417 - 40681487
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    ||||||||||| | ||||| ||| |||| ||||||||||||||||| |||  |||| |||| |||||||||    
T  40681417 taacgtttttttattaaaactaacggaagggaccaaaacatgtaacagagataaagataaagtaccaaaac 40681487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 41550247 - 41550304
Alignment:
Q  43 tatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaa 100  Q
    ||||||||| |||||||||||  | |||||||||| |||||||||  |||||||||||    
T  41550247 tatgaacaatcatctgaaacacgaatccagatgcagtaaaaattgatacaagaagaaa 41550304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 2946144 - 2946108
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaa 445  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  2946144 taacgtttttttaataaaattaatggaaatgaccaaa 2946108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 31 - 342
Target Start/End: Complemental strand, 39992028 - 39991718
Alignment:
Q  31 agtattgtcccttatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgttttctgggattgtgtt 130  Q
    |||||||| || |||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  39992028 agtattgttccatatgaacaaacatctgaaacaaaaatccagatacaataaaaattgctccaagaagaaaattgtttatgttgttttctgggattgtgtt 39991929  T
Q  131 cgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattggag--cnnnnnnnnctgagaagaaaggggaag 228  Q
     |||| ||| |||||  ||||||||||||||||||||||||||||||||||  |||||||||| |||||||            ||||| |||||||||||    
T  39991928 tgaaaagaa-atgattgtaattttgtgtttggcagagagtgaaatagagga--atgggtatcagattggagaaagaaaaaagatgagatgaaaggggaag 39991832  T
Q  229 agagggtttgaatttgagttaaccatttcacaacaattaaaagaatttgggagtaaaataaagttagggtttgaataacattcatgtgagtcaattctgg 328  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  39991831 agagggtttgaatttgaattaaccctttcacaacaattaaaagaacttgggagtaaaataaagttacagtttgaataacattcatgtgaatcaattctgg 39991732  T
Q  329 atttttctcatgag 342  Q
      ||||||||||||    
T  39991731 gcttttctcatgag 39991718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 402 - 482
Target Start/End: Complemental strand, 39991653 - 39991573
Alignment:
Q  402 taaaccctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacgga 482  Q
    |||||| |||| |||||||||||| ||||| | ||||||| ||||||||| | ||||||||||||||||||||||||||||    
T  39991653 taaaccttaacattttttgaataatattaacgaaaaggactaaaacatgtgatggagcaaaagttaaaataccaaaacgga 39991573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 511
Target Start/End: Complemental strand, 27688599 - 27688526
Alignment:
Q  438 ggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaccgat 511  Q
    |||||||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||||||||    
T  27688599 ggaccaaaacatgtaacggaacaaaagttaaaataccaaaacggacttttttttagttatgggaccaaaccgat 27688526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 511
Target Start/End: Original strand, 27695520 - 27695593
Alignment:
Q  438 ggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaccgat 511  Q
    |||||||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||||||||    
T  27695520 ggaccaaaacatgtaacggaacaaaagttaaaataccaaaacggactttttttcagttatgggaccaaaccgat 27695593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 479
Target Start/End: Complemental strand, 32304374 - 32304304
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||||||  |||| |||| |||||||||    
T  32304374 taacgtttttttattaaaattaacggaaaggaccaaaacatgtaacggagataaagataaagtaccaaaac 32304304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 438 - 479
Target Start/End: Original strand, 20185758 - 20185799
Alignment:
Q  438 ggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  20185758 ggaccaaaacatgtaacggaacaaaagttaaaataccaaaac 20185799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 481
Target Start/End: Original strand, 39992402 - 39992482
Alignment:
Q  402 taaaccctaacgttttttg-aataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacgg 481  Q
    ||||||||||||||||||  ||||||||||| ||||| |||||||||| | ||| ||  |||| |||||||||||||||||    
T  39992402 taaaccctaacgttttttttaataaaattaacggaaatgaccaaaacaagaaacagaataaaaattaaaataccaaaacgg 39992482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 5348837 - 5348881
Alignment:
Q  433 ggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaa 478  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||    
T  5348837 ggaaaggaccaaaatatgtaacggag-aaaagttaaaataccaaaa 5348881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 34819536 - 34819606
Alignment:
Q  409 taacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 479  Q
    ||||||||||||| ||||| ||| |||| ||||||||||||||||| |||  |||| |||| |||| ||||    
T  34819536 taacgttttttgattaaaactaacggaatggaccaaaacatgtaacagagataaagataaagtacctaaac 34819606  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 2829651 - 2829711
Alignment:
Q  407 cctaacgttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaa 468  Q
    ||||||||||||  | ||||| ||||||||| |||||||| ||||||||||| |||||||||    
T  2829651 cctaacgtttttgaattaaaactaatggaaatgaccaaaatatgtaacggag-aaaagttaa 2829711  T

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Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 19718407 - 19718663
Alignment:
Q  19 tgaacatgttgaagtattgtccct-tatgaacaaacatctgaaacaaaagtccagatgcaataaaaattgccacaagaagaaaattgtttatgttgtttt 117  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| ||||||| ||||||||||||   |||||||||||||||||||||||||||    
T  19718407 tgaacatgttgaagtattgtccccatatgaacaaacatctgaaacaaaaatccagatacaataaaaattgttccaagaagaaaattgtttatgttgtttt 19718506  T
Q  118 ctgggattgtgttcgaaacgaagatgatgataattttgtgtttggcagagagtgaaatagaggaatatgggtatcaaattgga-gcnnnnnnnnctgaga 216  Q
     |||||||||||| |||| |||||||||  ||||||||||||||||||||||||||||||||||  ||| |||||| |||||| |          |||||    
T  19718507 ttgggattgtgtttgaaaagaagatgattgtaattttgtgtttggcagagagtgaaatagagga--atgagtatcagattggaggaaaaaaaaaatgaga 19718604  T
Q  217 agaaaggggaagagagggtttgaatttgagttaaccatttcacaacaattaaaagaatt 275  Q
     ||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||    
T  19718605 tgaaaggggaagagagggtttgaacttgaattaaccctttcacaacaattaaaacaatt 19718663  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 37967468 - 37967514
Alignment:
Q  256 tcacaacaattaaaagaatttgggagtaaaataaagttagggtttga 302  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  37967468 tcacaacaattaaaagaattcgggagtaaaataaagttagggtttga 37967514  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 482
Target Start/End: Original strand, 19718796 - 19718879
Alignment:
Q  402 taaaccctaacgttttttg---aataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacgga 482  Q
    ||||||||||||||||||    ||| | ||||| ||||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  19718796 taaaccctaacgttttttttttaattatattaacggaaaggactaaaacatgtgacggaataaaagttaaaataccaaaacgga 19718879  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 19718689 - 19718737
Alignment:
Q  294 agggtttgaataacattcatgtgagtcaattctggatttttctcatgag 342  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  19718689 agggtttgaataacattcatgtgaatcaattatgggtttttctcatgag 19718737  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 482
Target Start/End: Complemental strand, 37966951 - 37966883
Alignment:
Q  414 ttttttgaataaaattaatggaaaggaccaaaacatgtaacggagcaaaagttaaaataccaaaacgga 482  Q
    |||||| ||||||| ||| | ||| |||||||| ||||||| |||  ||| ||||||||||||||||||    
T  37966951 tttttttaataaaactaacgaaaatgaccaaaatatgtaaccgagataaatttaaaataccaaaacgga 37966883  T

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Target: scaffold0394 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 438 - 511
Target Start/End: Complemental strand, 14384 - 14311
Alignment:
Q  438 ggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaccgat 511  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||||||||    
T  14384 ggactaaaacatgtaacggaacaaaagttaaaataccaaaacggacttttttttagttatgggaccaaaccgat 14311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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