View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_low_5 (Length: 481)
Name: NF21124_low_5
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 6 - 465
Target Start/End: Complemental strand, 6490847 - 6490392
Alignment:
| Q |
6 |
agcatcagagacaatacctccagcttctgtagaagtacaattgtacgtcaaagttaaacaatcatgtatacaagattagaagtagaagacacggacttgt |
105 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6490847 |
agcatctgagacaatacctccagcttctgtagaagtacaattgtacgtcaaagttaaacaatcatgtatacaagattagaagtagaagacatggacttgt |
6490748 |
T |
|
| Q |
106 |
ttttactgtacaggaactaaatattgcaacatgttaacggaagacacaattttctgctccaatatcaagcatagaaatattaatcctagccacataaact |
205 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490747 |
ttttactgtacatgaactaaatattgcaacatgttaacggaagacgcaattttctgctccaatatcaagcatagaaatattaatcctagccacataaact |
6490648 |
T |
|
| Q |
206 |
tctgctctatcagtttcaacttatagtctgtctgaacttgttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgcaaacaaa |
305 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490647 |
tctgctctatcagtttcaacttatagtctg----aacttgttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgcaaacaaa |
6490552 |
T |
|
| Q |
306 |
ttccaagacactaaactagctccagagtccagaaaaataatcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttactta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490551 |
ttccaagacactaaactagctccagagtccagaaaaataatcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttactta |
6490452 |
T |
|
| Q |
406 |
aatcatagaaaacccatctaccttttgtctctaatgattcagcatgaatgacattgtgat |
465 |
Q |
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| T |
6490451 |
aatcatagaaaacccatctaccttttgtctctaatgattcagcatgaatgacattgtgat |
6490392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 465
Target Start/End: Original strand, 38699834 - 38700289
Alignment:
| Q |
6 |
agcatcagagacaatacctccagcttctgtagaagtacaattgtacgtcaaagttaaacaatcatgtatacaagattagaagtagaagacacggacttgt |
105 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
38699834 |
agcatctgagacaatacctccagcttctgtagaagtacaattgt----caaagttaaacaatcatgtata--agattagaagttgaagacacggacttgt |
38699927 |
T |
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| Q |
106 |
ttttactgtacaggaactaaatattgcaacatgttaacggaagacacaattttctgctccaatatcaagcatagaaatattaatcctag------ccaca |
199 |
Q |
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|||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
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| T |
38699928 |
ttttactgtag-ggaactcaatattgcagcatgttaacggaagacgcaattttctgctccaatctcaagcatagaaatattaaccctaggcctagccaca |
38700026 |
T |
|
| Q |
200 |
taaacttctgctctatcagtttcaacttatagtctgtctgaacttgttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgca |
299 |
Q |
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|||| |||||| ||||||||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38700027 |
taaatttctgcactatcagtttcaatttatagcctgac---acttgttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgca |
38700123 |
T |
|
| Q |
300 |
aacaaattccaagacactaaactagctccagagtccagaaaaataatcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatcct |
399 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| | ||||||| |||||||| |
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| T |
38700124 |
aatcaattccaagacactaaactagctccagagtccagaaaaataatcaccataaagccacaacagtttggttctctaaataaccttcaccacagatcct |
38700223 |
T |
|
| Q |
400 |
tacttaaatcatagaaaacccatctaccttttgtctctaatgattcagcatgaatgacattgtgat |
465 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
38700224 |
tacttaaatcatagaaaacccatctaccttttgtttctaatgattcagcatgaataacattgtgat |
38700289 |
T |
|
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