View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_low_6 (Length: 361)
Name: NF21124_low_6
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 17646609 - 17646266
Alignment:
| Q |
1 |
ccaatgcatgtactttcaaaatctataaatatatcaataaattcattttgcaatctagtctaatttaatataagactttctaatagtgtgcaatatatat |
100 |
Q |
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| T |
17646609 |
ccaatgcatgtactttcaaaatctataaaaatatcaataaattcattttgcaatctagtctaatttaatataagactttctaatagtgtgaaatatatat |
17646510 |
T |
|
| Q |
101 |
aaagaaatcctttgaaaggagtattatttctgatttcataaaataaattttaatgcgtacacactattttaatacgtacacactctcttttgtctgatat |
200 |
Q |
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| T |
17646509 |
aaataaatcctttgaaaggagtattatttctgatttcataaaataaattttaatgcgtacacactattttaatacgtacacactctcttttgtctgatat |
17646410 |
T |
|
| Q |
201 |
atcatgaaaacataaataattcctaaaatgtcattccatttattgaaaatacataaaactgaaggctagtcaattcactcaaatatggtnnnnnnnngtt |
300 |
Q |
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| T |
17646409 |
atcatgaaaacataaataattcctaaaatgtcattccatttattgaaaatacataaaactgaaggctagtcaattcactcaaatatggtaaaaaaaagtt |
17646310 |
T |
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| Q |
301 |
gtaacttttcttcttattttcctcaattcatgttagcaaataaa |
344 |
Q |
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| T |
17646309 |
gtaacttttcttcttattttcctcaattcatgttagcagataaa |
17646266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 17674838 - 17674908
Alignment:
| Q |
89 |
tgcaatatatataaagaaatcctttgaaaggagtattatttctgatttcataaaataaattttaatgcgta |
159 |
Q |
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| T |
17674838 |
tgcaatatacataaaggaatcctatgaaaagagtaatattcgtgatttcataaaatgaactttaatacgta |
17674908 |
T |
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