View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_low_8 (Length: 349)
Name: NF21124_low_8
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 42520768 - 42521100
Alignment:
| Q |
1 |
acacctgtcttcgctcaatttgtattccatttagagtctcgcttattttcatttgaaaataatttaacaatatgatccatgatacctttctatgtttcac |
100 |
Q |
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| T |
42520768 |
acacctgtcttcactcaatttgtattccatttagagtctcacttattttcatttgaaaataatttaacaatatgatccatgatacctttctatgtttcac |
42520867 |
T |
|
| Q |
101 |
tcttaaatttgaccttgtgaaatttggaattgactaatgtttcagatacctttgaccattagtgttgttcattataactatgttgtcatgcagggctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520868 |
tcttaaatttgaccttgtgaaatttggaattgactaatgtttcagatacctttgaccattagtgttgttcattataactatgttgtcatgcagggctgtt |
42520967 |
T |
|
| Q |
201 |
gtattgaatatataattttggagggagacaacttggcttccttgtttccaaatgcatacttaaatttaggtggaattgaattgaatccacaaacattgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520968 |
gtattgaatatataattttggagggagacaacttggcttccttgtttccaaatgcatacttaaatttaggtggaattgaattgaatccacaaacattgtt |
42521067 |
T |
|
| Q |
301 |
tgctgtggttgcagccttggctgttcttcctac |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42521068 |
tgctgtggttgcagccttggctgttcttcctac |
42521100 |
T |
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